Facklamia hominis: R0V13_00385
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Entry
R0V13_00385 CDS
T09549
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fhm
Facklamia hominis
Pathway
fhm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fhm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R0V13_00385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fhm03019
]
R0V13_00385
03009 Ribosome biogenesis [BR:
fhm03009
]
R0V13_00385
Enzymes [BR:
fhm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R0V13_00385
Messenger RNA biogenesis [BR:
fhm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R0V13_00385
Ribosome biogenesis [BR:
fhm03009
]
Prokaryotic type
rRNA helicases
R0V13_00385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
SUa-2TM
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WPJ90895
LinkDB
All DBs
Position
72985..74442
Genome browser
AA seq
485 aa
AA seq
DB search
MKFTDLNLKNELLTSLDELGFEEPTPIQQQGIPIALSGKDLIGQAQTGTGKTAAFGLPLL
NKIDPKNTNVQALIVAPTRELAIQVQEELYRLSKVLKTNVYVVYGGAPIDKQIKRLRSQK
VQVLVGTPGRLLDLLKRNVLKLNAVQTLVLDEADEMLNMGFIEDIKAIIQQAPETRQTLL
FSATMPKAIKELAGQFLTNAEHIEIKAQYLTTDLIEQYYTRCRDDEKFDILTRFIDVQNP
KQAIVFCRTKKRVDEVGRGLNLRGYNAELIHGDITQQKRTSVIDAFRKGEVELLVATDVA
ARGLDISGVTHVYNYDITQDPESYVHRVGRTGRAGNEGMSLTFVQGNELGYLATIEKLIG
KQMLPLKPPTQSEVRRGQVQQVIDDVNDILEKGNVDEFRQVAKLLLNHYQSNDLVSALLS
QLLVENNHIEVEISPQRPLPNVRRFSNHKNASKNASSKRSHRSNNKNRGHSKKRNHKNFV
MKKSK
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttactgatttaaacttaaaaaatgaattattaacaagcttagacgaattaggt
tttgaagaacccacgcccattcaacaacagggaattccaattgcattaagtgggaaggac
ttgatcggacaagcgcaaacaggaacgggaaagacagctgcgtttggtctgcccttattg
aataaaattgatccaaagaatacaaatgtccaagctttgattgttgcccccacgcgagaa
ttagcgattcaagtgcaagaagaattatatcgtttatcaaaagttttaaaaacaaatgtc
tatgtggtatacggtggagctccaattgacaagcaaattaaacgattgcgatcacaaaaa
gtgcaagttctcgtaggtacgccgggacggttgttggatttacttaaacgtaatgtgctt
aagttaaatgcagttcaaacactagtgttggatgaagctgatgagatgctaaatatgggg
ttcattgaggatattaaggctattattcagcaagcacctgaaactagacagactttactt
ttctcagcaacgatgccaaaagcgattaaagagttggctggccagtttctaacgaatgct
gagcatatagaaattaaagcgcaatatttgacgacggatctaattgaacagtattataca
cgctgccgtgatgatgaaaaatttgatattttaacgcgttttatagatgtgcagaaccct
aagcaggcaattgtcttctgtcgtacgaaaaaacgagttgatgaagtgggtcgaggatta
aatttacgcggctataatgcggaattaattcatggagatattactcaacaaaagcgcact
tctgtgattgatgcttttcgaaaaggggaagtagaactacttgtagctaccgatgttgcg
gctagagggttggatatttctggtgtgactcatgtgtataattatgatattactcaagat
cctgagtcctatgttcatcgcgtggggcggacagggcgtgcaggtaatgaaggaatgtca
ctgacctttgttcaaggaaatgagctaggttacttagcgacgattgagaaattaatcggc
aaacaaatgcttcctctaaaaccacctacacaaagtgaggttagacggggtcaagtccag
caagtgatagacgacgttaatgatattttggaaaaaggtaacgtggatgagttccgtcaa
gttgctaagttactgttaaaccattatcaaagtaatgatttggtttcggctttgttaagc
caactcttagtagaaaataatcatattgaagttgaaatttcaccgcaaaggcctttacca
aatgttcgtcggttctcgaatcataagaacgctagtaaaaatgcgtcttctaaacgttca
caccgttctaacaataaaaatcgcggtcattctaaaaaaagaaaccataaaaattttgtc
atgaagaaaagtaagtaa
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