Facklamia hominis: R0V13_03995
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Entry
R0V13_03995 CDS
T09549
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
fhm
Facklamia hominis
Brite
KEGG Orthology (KO) [BR:
fhm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fhm03019
]
R0V13_03995
03009 Ribosome biogenesis [BR:
fhm03009
]
R0V13_03995
Enzymes [BR:
fhm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R0V13_03995
Messenger RNA biogenesis [BR:
fhm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R0V13_03995
Ribosome biogenesis [BR:
fhm03009
]
Prokaryotic type
rRNA helicases
R0V13_03995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
AAA_30
DUF533
CMS1
Flavi_DEAD
MGS
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WPJ91533
LinkDB
All DBs
Position
793029..794348
Genome browser
AA seq
439 aa
AA seq
DB search
MLFKQLSIQPFIHEALRKLHFSSLTPVQEEVIPRALKGESLVVQSQTGTGKTHAFMIPIM
NQIKADRQEVQAVITAPSRELAAQLYDVAVQLVEDSPAAIQIMACIGGSDKQRQLDRLTN
QQPQVVIGTPGRIFDLMKENALWVQTANCMVIDEADMTLDMGFLSLVDEIASRLPADLQM
MAFSATFPQSLIQFLNKYMSQPEIIKIDSNRILVDQVENYLINTKGRDRKELVYQLLTLG
HPFLAVVFCNTRHYADQMTEYLREKGLKVAKVHGGLDARERKRIMKQIKQLDFQYVVASD
LAARGIDIPGISMVINTELPKDLEFFVHRVGRTARSNIAGTAYTFVQPDDDERLSQLEAK
GIEFREVTLVNGEIKEIEQRYRRTQRSDHHRQEIDHTVKGMIHRSKKSKVKPGYKKQLKE
NIRSYQKQQSRRRAKNRRS
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgttatttaaacaactttcaattcaaccgtttattcatgaagccttaagaaagcttcat
ttttcatcattgacgccggtacaagaagaagttataccacgtgccctaaaaggggaatct
cttgttgttcaatcacaaactggaaccggtaagacgcatgcttttatgatacctattatg
aatcagataaaagctgatcgacaagaagttcaggctgtaattacagcccctagtcgtgaa
ttggccgctcaactttatgatgtggctgttcaattggttgaagatagccccgctgcgatt
cagattatggcttgtataggggggagtgacaagcaacgacaattagatcgacttacgaat
cagcaaccgcaggtggtcattggaactccaggtcggatctttgatcttatgaaagaaaat
gctctctgggttcaaacagcaaattgcatggtaattgatgaagctgacatgaccttagat
atgggatttctatctctggtggatgaaattgcctctcgcttacctgcggatcttcaaatg
atggctttttcagcaacttttccgcaaagtttaattcaatttttgaataaatacatgagt
caaccagaaattattaagattgatagtaaccgcatattagtggatcaagttgagaattac
ttgatcaatacaaaggggcgggatcgtaaagaactggtctatcagttattgaccttaggg
catccttttttagcggttgttttctgtaacactcgtcattacgcagatcagatgaccgag
tacttgcgagaaaaagggctaaaagttgctaaagtccatggagggcttgatgcgagagag
cgtaagcgtattatgaaacagatcaaacagttagattttcaatatgtggtggcgtcggat
cttgctgctaggggaatcgatattccgggaatctccatggttattaatacggagttgcct
aaagacttggaattttttgttcaccgagtgggacgcacagcaaggtcgaatattgcaggt
accgcatatacttttgtgcagcctgatgatgatgagcgtttaagtcaacttgaggctaag
gggattgaatttagagaagtaacccttgtaaatggcgaaattaaagaaattgaacaacgt
tatcgtcggacacaacgttctgatcatcatcgtcaggagattgatcacacggttaaggga
atgattcatcgcagcaaaaaatcaaaagttaaaccgggctacaagaaacaattaaaagaa
aatattagatcttatcaaaaacaacaaagtagacggcgagctaagaatcgacgtagctaa
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