Facklamia hominis: R0V13_05280
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Entry
R0V13_05280 CDS
T09549
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fhm
Facklamia hominis
Pathway
fhm03030
DNA replication
fhm03430
Mismatch repair
fhm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fhm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R0V13_05280 (dnaE)
03430 Mismatch repair
R0V13_05280 (dnaE)
03440 Homologous recombination
R0V13_05280 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fhm03032
]
R0V13_05280 (dnaE)
03400 DNA repair and recombination proteins [BR:
fhm03400
]
R0V13_05280 (dnaE)
Enzymes [BR:
fhm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
R0V13_05280 (dnaE)
DNA replication proteins [BR:
fhm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
R0V13_05280 (dnaE)
DNA repair and recombination proteins [BR:
fhm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
R0V13_05280 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WPJ89970
LinkDB
All DBs
Position
complement(1079904..1082273)
Genome browser
AA seq
789 aa
AA seq
DB search
MSGKLLAFAVMQRFVQVRAGSAAGSLIAYLLDITQVDPIEYGLLFERFLNPERYNMPDID
IDIPDDKRYQVFNFIEKHYGHKNVAKLITFGTFGAKQAIRDCLRVLGKSKNEQSLWSKAI
PSKPSIKLQEAFKLSDTLRRIVHQSKENQALFDLALAIEGLPRHTSIHASGIVICDQDLS
QLIPVLDRQGELQLTQFAMEEVEELGLLKMDFLGLRNLQLLDDILLTIRREYQKEIDIRR
IDLSDKATLALFQRADTAGVFQFESSGIRQVLQRLYPESLEDIIAVNALYRPGPMQQIQH
FIARKHGKETIDYLHPLLKPILEKTYGIIVYQEQVMQICRQLAGFTLGQADLLRRAMGKK
QISIMDQEKTRFIEGALERGIQQQTAEQIFQYIYQFANYGFNRSHAVVYSTLAFQLAYLK
AHYPAAFYVCLLNQGTHSSQGDLAYLPVAKRVLGRLLPLDINLSKADLSIDQGSLRLGLM
AIKGMRAEVCRSIIQERELVGKYQNYFDFLSRLDAAYLNEKTIQPLIDAGALDCLGYNRA
SLTHNLPAFIQYFKFSNNQISLFKEMEPKVELVEDWTEKERLARQRAVLGNQWMDHPMSS
MMTSIESSSQYTLLEQISAKRVRSTVTFIAFVEEIRKKTTKRQEEMAFLTVSDPQAEAKL
VVFPNVFQRIQTFLQEGKILCFNGRIDQDLNGQKQIIVQSIERLTDQIAPKAPTNKYQTV
FIRLEKEVMALKLDWLKQLCLQNPGPLKVIIVDSQKKSWQLDEHYNLSAASRIQRALEQA
FGKENIAYR
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgggaaattattggcttttgccgttatgcaaagattcgtacaggtccgggcaggt
tcggcagcaggttctcttattgcctatcttttagatatcacacaagtggatcccattgaa
tatggattattatttgaacggtttttgaatcctgaacgttataatatgccagatattgat
atcgatattccggatgataaacgatatcaggtctttaactttatcgaaaaacactatggt
cataagaatgtagcaaaattaattaccttcgggaccttcggtgctaaacaggcgattcga
gattgtttgagggtcttaggtaagtctaaaaatgaacaatccctttggtccaaagcaatc
ccatctaagccttccattaaattacaagaggcctttaagctgtcagatactttaaggcgt
atcgttcatcagtcaaaagaaaatcaagctttgtttgaccttgctttagccattgaaggt
ctacctcgtcatacatcgattcatgcctctggaattgtgatttgtgatcaagatttatcc
caactgattccggtgcttgaccgtcaaggcgaactacagttaactcaatttgctatggaa
gaagtagaagagcttggtctattgaagatggatttccttggattgcgaaacttgcaattg
ttggatgatattttgctgacgattcgacgagaatatcagaaggagattgatattcgtcgg
attgacttatcagataaagcgaccttagcactttttcaaagggcggatacagcaggggtt
tttcaatttgagtcctctgggattcgccaagtactacagcgattatatccagaatcattg
gaagatattatcgctgtaaatgccttgtatcgtccaggacccatgcagcaaatccaacat
tttattgcaagaaaacacggtaaagagacgattgattatttgcatccactattaaaacca
attttagaaaaaacctatggtattattgtttaccaggaacaggtgatgcagatttgccgt
cagttagctggctttacactaggacaggccgatttattgaggcgtgcaatgggtaaaaag
caaatttctattatggatcaagaaaagactcgatttattgaaggagctttggaacgtggg
attcaacagcaaactgcggaacaaattttccaatatatttatcagtttgctaattatggt
tttaatcgatctcatgctgttgtttattcgaccctggcattccagctggcttatttaaag
gctcattatcctgcagctttttacgtatgtctcctgaaccaaggaacacattctagtcaa
ggagatttggcctatttaccggtggcaaaaagagttttaggacgcttattaccattggat
atcaatctttccaaggcagacctatccattgatcaaggcagtttgcgattggggttaatg
gctattaaaggaatgcgggctgaagtttgtcgttcaattattcaagagagagaattagtt
ggaaaataccaaaattattttgacttcttgagtcgacttgatgcagcttatttgaatgaa
aaaacaatccagcctttaattgatgcgggagctttggattgtttaggttataatcgagcc
tccttaacccataatcttccggcctttattcaatattttaagtttagtaataatcaaatc
tctttattcaaagagatggaacctaaagttgaattggttgaagactggactgaaaaagaa
cgattagcacgacaacgtgctgtattaggtaatcaatggatggaccatcccatgtcatcc
atgatgacaagtattgaatcgagctcacaatataccctgttggagcaaataagtgctaaa
agagtaagaagcactgttactttcattgcttttgtagaagaaattagaaagaaaacgacc
aaacggcaagaagaaatggcttttttgaccgtgagtgacccacaagcggaagcaaagtta
gtggtctttcctaatgtctttcaaaggattcaaactttcctacaagaggggaaaattcta
tgttttaatggtaggatagatcaagatctgaatggtcagaagcagataattgttcaatcg
attgagcgcttgacagatcagattgccccaaaagctcctactaataaataccagacagtt
tttattcgtttggaaaaagaggtaatggcacttaaattggattggttgaagcaactctgt
ttacaaaatccaggtcctttaaaagtaattattgttgattcacagaaaaaatcttggcag
ttagatgaacattacaatttatcagcagccagccgaattcagcgcgctttagagcaagcc
tttggtaaggaaaatattgcctaccggtaa
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