Facklamia hominis: R0V13_07810
Help
Entry
R0V13_07810 CDS
T09549
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fhm
Facklamia hominis
Brite
KEGG Orthology (KO) [BR:
fhm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fhm03009
]
R0V13_07810 (rlmD)
Enzymes [BR:
fhm01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
R0V13_07810 (rlmD)
Ribosome biogenesis [BR:
fhm03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
R0V13_07810 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
TRM5-TYW2_MTfase
Cons_hypoth95
PCMT
PrmA
Methyltransf_23
Methyltransf_11
Methyltransf_12
Methyltransf_4
UPF0020
ESX-1_EspG
Methyltrans_SAM
DNA_methylase
RrnaAD
Motif
Other DBs
NCBI-ProteinID:
WPJ90389
LinkDB
All DBs
Position
complement(1584785..1586182)
Genome browser
AA seq
465 aa
AA seq
DB search
MAKNTYPTEVLQVQIQDLNDKGQGMAVYYHPVDQAGQLARKLRLTIPFAYPGDVVQVTVP
NAKGRRRATVNYDSILTLSSDRTGQAAPGQVPEAGAPLRYMDYSAQLAYKENKVRDLFSQ
AGFDPQAVKPILGMDNPYHYRNKMELTFGKAGAIGMHQAGNFRVINDWQDNVLAPEIMMT
VKETVASWQQAHHLSTYDKESRQGLLRHLMMRQSFATQELMVAVFATESSDAYTQAAKDL
VQRLQAACPQLASLLWIENTDIANRTRQAVTVLAGRDFIYDQLAGFRYRIWFDTFFQPNP
QQAEKMVETALNLAQINADMRVMDLFCGVGTFSLPLAQAAKELAGIEIVDSSIQSARRNA
ADNGIDNTYFLTADARSGMKTVEAEWGQPDLVLLDPPRSGAGGKVMRRIGRLGTDKIIYV
SCNPDTLVQDLQWLKDFGYELVSCQPIDQFPQTVHVEAIALIQKM
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaacacgtatccaacggaggtcctccaggtccaaattcaagatttaaatgat
aagggacaggggatggccgtctattaccacccggttgaccaagccggtcaactggctcga
aaattgaggctcacgattccatttgcctatccgggggatgtggtccaagtcactgttccc
aatgctaagggacgccgccgagccaccgttaattatgatagcatcttgaccctttcgtct
gatcggaccggtcaagcagccccagggcaagttcctgaagcgggggctcctcttcgctat
atggactattcagctcagttggcctataaggagaataaagtgcgcgacctctttagtcag
gcaggctttgacccgcaagccgtaaagcctatcttggggatggacaatccttaccattac
cgcaataagatggaattaacttttggtaaagcgggagcgatcgggatgcaccaagcaggg
aatttccgggtgatcaatgattggcaggataatgtgctggccccagagatcatgatgacc
gttaaggagactgtcgctagctggcagcaagcccatcatttatcaacttatgataaggag
agccgacaaggactcttgcgacatttgatgatgcggcagagctttgcgacccaggaattg
atggtggcggtttttgcgaccgagtctagtgacgcttatacccaagcagctaaagacctg
gttcaacgccttcaagctgcttgcccccaattagccagtcttttatggattgagaatacg
gatattgccaatcggactcgccaagcagtgactgtcctagcagggcgtgattttatttat
gatcagttagctggctttcgctatcggatctggttcgataccttcttccaacccaacccc
caacaagcagaaaaaatggtcgagactgctttgaatttggcacagatcaatgctgacatg
cgggtgatggatctcttctgtggcgtgggaaccttctctctaccgctagctcaagcggcc
aaggaattagccggtattgagattgttgacagctcgattcaatccgccagacggaatgcg
gcggataatggcattgacaatacctacttcttaacggccgatgcccgcagtgggatgaag
accgttgaagcagaatggggtcaaccagacttagttctattggatcctcctcgtagcggt
gccggtggtaaggtcatgcgccgaataggcagattggggaccgacaagattatctacgtc
tcctgcaacccagataccctggttcaagacctccaatggttgaaggactttggttatgag
ctagtctcatgccagcccattgaccaattcccacagacggtgcacgtggaagccatagcg
ttgatacaaaagatgtaa
DBGET
integrated database retrieval system
