Facklamia hominis: R0V13_10170
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Entry
R0V13_10170 CDS
T09549
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fhm
Facklamia hominis
Pathway
fhm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fhm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R0V13_10170 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fhm03021
]
R0V13_10170 (rpoC)
03400 DNA repair and recombination proteins [BR:
fhm03400
]
R0V13_10170 (rpoC)
Enzymes [BR:
fhm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R0V13_10170 (rpoC)
Transcription machinery [BR:
fhm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R0V13_10170 (rpoC)
DNA repair and recombination proteins [BR:
fhm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R0V13_10170 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WPJ90803
LinkDB
All DBs
Position
complement(2046513..2050175)
Genome browser
AA seq
1220 aa
AA seq
DB search
MIDVNKFDSMEIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
ACGKLKRVRYKGRVCDRCGVEVTRAKVRRERMGHIELAAPVTHVWYFKGIPSRIGLILDM
SPRLLEEVIYFASYIVIDAGDTDLEVKSLLTESQYREKKREYGNRFYAKMGAEAIKELLQ
SVDVAEEVAVLREELKTAKGQKRTRAIRRLDILNAFLESGNKPEWMVLDALPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRAVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGVPKE
MAIELFKPFVMKELVEREIASNVKNAKRMIETQNDAIWPVIEEVIQEHPVLLNRAPTLHR
LGIQAFEPVLVEGKAIRLHPLACEAYNADFDGDQMAIHVPLSEEAQAEARLLMLGAHHIL
NPKDGKPVVTPSQDMVLGNYYLTIEEAGRVGEGMILSSVSEAETAYENGYVHLHTRVAIP
AKNLKDKPFTDWQKERMMVTTIGKLFFNQIMPDSFPYLNEPSNENLTNKTPDKYFLEPGT
NVPEAIAAMDTVAPFKKKDLGKIIAEVFKRFKVTETSNMLDKLKNLGYKYSTRSGITVGV
ADVLRLESKPEILEKAHSRVDDITKMRRRGLLTEDERYQQVIRTWEEAKDHIQKDLQDSL
PRLNPIFMMSDSGARGNISNFTQLAGMRGNMAAPSGKIIELPITSNFREGLNVMEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREEDCGTDRGVEIREISDGNSIIESLE
ERLQGRYAHKTVFHPETGEVLVNANEFISDEKAAMIVNAGVKSVTIRSVFTCNTDHGVCK
HCYGRNLATGDEVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGGGDITQGLPRIQEI
FEARIPKGQATITEVAGTVTSIEEKSSERLKEITVSGKTDERSYKVPYKARLKVAEGDYV
ERGQALTEGSIDPKELLAVTDVLTVEKYLMREVQSVYRGQGVEIGDKHVEVMVRQMLRKV
RVMDPGSTQILPGALMDIADFAKANKETVTIGETPATARPVLLGITKAALETKSFISAAS
FQETTRVLTDAAIRGDRDYLIGLKENVIIGKLIPAGTGMSYYRDLGIKTEMDTKPQPVSE
EGNQEDPDEESNREEPQQMK
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtaaataaatttgactccatggaaattggactcgcatccccagaaaagatc
cggtcatggtcatatggagaagtcaaaaaaccagaaacaattaattatcgaactttaaag
cctgaaaaagacgggttgttctgcgaacgaatttttggtcctactaaggattgggaatgt
gcttgtggtaaattaaaacgagtaagatataaagggcgtgtgtgtgatcgatgtggcgtc
gaagtaacccgtgctaaagttagacgtgagagaatggggcatattgagttggctgccccc
gtcactcatgtgtggtattttaaaggaatcccaagtcgtatcggactaatcttggatatg
agtccgagacttttagaagaagtcatttactttgcttcatatattgtgatagatgcaggc
gataccgacttggaagttaaatcattgttaacagaaagtcagtatcgtgagaagaaaaga
gagtatggtaatcgtttctatgcaaaaatgggtgcagaggcgattaaagagttgcttcaa
tcggtagatgtggcagaagaagtagccgttttaagagaagagttgaagactgcaaaaggt
caaaaaagaacgcgagctatccgtcgtttagatatccttaatgcctttttagagtctggt
aataaaccagaatggatggtactcgatgctttacctgttattccacccgatttacggccg
atggttcaattagaagggggtcgttttgcgacttctgacttaaatgacttataccgtcgt
gtaattaatcgtaataatcgacttaaacggttattagatttaggagcaccaagcattatt
gttcaaaatgaaaaacggatgcttcaagaagcggttgacgcgttgatcgataatggccgc
cgcggaagagcggtaacagggccaggtaatcgtccacttaaatcgctatcgcatatgtta
aaaggtaagcaaggacgcttccgtcaaaacttgctaggtaagcgggtagattattcaggt
cgttcagttatcgtagtaggaccttccttgaaaatgtatcaatgtggagttccaaaggaa
atggctattgaattgttcaagccatttgtgatgaaagaattagttgagcgcgaaattgct
agcaatgtaaaaaatgctaagcgaatgattgagacgcaaaatgatgcaatttggcctgtt
attgaagaagtgattcaggaacatccggttttacttaaccgcgcacctaccctgcaccgt
ttgggaattcaagccttcgaacctgtgctagtagaggggaaggcaatacgtttacatccg
ttggcttgtgaagcgtataatgccgacttcgatggggaccaaatggcaattcatgtacct
ttatctgaagaagcccaagcagaagcacgcttattgatgctgggcgcgcaccacatctta
aatccaaaagatggaaaaccagtagtaaccccttcacaagatatggtcttggggaattat
tatttaaccattgaagaggctggtcgtgttggagaagggatgattttaagttcggtttct
gaagcagaaacagcttatgaaaatggttatgttcatcttcatactcgggttgcaattcca
gctaagaatttaaaagacaaaccgtttacagattggcaaaaagaaagaatgatggttaca
actattggtaaattattctttaatcaaattatgcctgatagtttcccttacttaaatgag
ccttccaatgagaacttaactaataagacgccagataagtacttcttagaaccgggaact
aacgtaccagaggcgattgcagcgatggatacggtagcgccatttaagaaaaaagacctt
ggaaagattattgccgaagtctttaaacgatttaaagttactgaaacatctaatatgctt
gataaattaaaaaatcttggttataaatactcgactcgctctggtattacggtgggtgtt
gccgatgtattgagacttgaatcaaaacctgaaattcttgaaaaagcccacagtcgtgta
gatgatattaccaagatgcgtcgtagagggcttctaacggaagacgaacgctatcaacaa
gttattcgcacttgggaagaagctaaagatcatattcaaaaggatctacaagacagccta
ccaagattgaatccaatctttatgatgtcagactcaggagctcgtggtaacatttctaac
tttactcagttagctggtatgcgtggtaacatggctgcaccttctggaaagatcattgaa
ttgccgattacttctaacttccgtgagggtctcaatgttatggagatgtttatttcaact
cacggagctagaaaaggaatgacggatacggctttgaagacggccgactcaggatactta
actcgtcggttggtcgatgtggctcaagatgtcattattcgtgaagaagactgtggaaca
gatcgtggtgtagaaatccgtgaaatatctgatggtaattcgatcattgaatcactagaa
gaaaggttacaaggacgatatgcgcataagacagttttccatcctgaaacaggtgaagtg
ctcgtaaatgcgaatgaatttattagcgatgaaaaagcagctatgattgtgaatgcagga
gttaaatctgtgacgattcgttcagtatttacttgtaatacggatcatggtgtatgtaaa
cattgttatggaagaaacttggcaacgggtgatgaagtagaagttggcgaagctgtcgga
acaattgcagctcagtcaatcggtgagccgggtactcaattaaccatgagaacgttccat
acgggcggtgttgctggtggtggagatatcactcaaggtttaccgcggattcaggaaatt
tttgaagctagaattcctaagggtcaagcaacgattacagaagttgcaggaacggtgacc
tccattgaagaaaaatccagtgaacgtctaaaagaaattactgtctcaggtaaaacagat
gaacgtagttataaagttccatataaagctcgtctaaaagtagccgaaggggattatgtt
gaaagaggtcaggctttaaccgaaggttcgattgatccgaaagaattattagctgtcact
gatgtactaactgttgaaaaatatttgatgcgtgaagtacaatcagtttatcgtggacaa
ggggtagaaattggtgataagcacgttgaagtaatggtacgacaaatgcttcgaaaagtt
agagtaatggatcctggatccacacagattttaccaggagcattaatggacattgcagac
tttgccaaagccaataaggaaacagtaacaattggcgaaacgccagctactgcacgtccg
gtattactaggaattacgaaagcagctttggaaacaaaatcatttatctctgctgcatcc
ttccaagaaacaacaagggtcttaacagatgctgcaatccgtggagatagagattatcta
attggattgaaagaaaatgtgattattggtaaattaattccagcaggtacaggtatgtct
tattatcgtgatttagggattaaaacggaaatggatactaaaccacaacctgtttcagaa
gaaggaaaccaagaagatccagatgaagaaagcaatcgagaagaaccccaacaaatgaaa
taa
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