Flavobacterium humidisoli: M0M44_00635
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Entry
M0M44_00635 CDS
T08925
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
fhu
Flavobacterium humidisoli
Pathway
fhu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fhu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M0M44_00635 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fhu03019
]
M0M44_00635 (rny)
Messenger RNA biogenesis [BR:
fhu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M0M44_00635 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
HTH_37
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
UPZ15868
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Position
126368..127927
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AA seq
519 aa
AA seq
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MDIITIIIGIVGIAAGFAIAKIIEKSNISNLIKNAKKEAASILKDANLEAENIKKDKILQ
AKERFIELKSEHEQVILARDKKVAEVEKRVRDKESQISNELSKAKKVNEDYEAKTAEYNN
KIEVLDKKQAEVDKLHKSQLQQLEVISGLSAEEAKEQLVEGLKAEAKTKAMSHIQETIEE
AKLTAQQEAKKIIINTIQRVGTEEAVENCVSVFNIESDDVKGRIIGREGRNIRALEAATG
VEIIVDDTPEAIILSCFDPVRREIARLSLHKLVTDGRIHPARIEEVVAKTAKQIDDEIIE
VGKRTVIDLGIHGLHPELIKVVGRMKYRSSYGQNLLQHSREVSKLCGIMAAELGLNVKLA
KRAGLLHDIGKVPDTESDLPHALLGMQWAEKYGEKEEVCNAIGAHHDEIEMKSLLSPIIQ
VCDAISGARPGARRQVLDSYIQRLKDLEDVAYGFSGVKNAYAIQAGRELRVIVESEKVSD
DNAANLSFEISQKIQTEMTYPGQVKVTVIRETRAVNIAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggacatcataacgatcatcattggtattgtaggtattgcagcaggttttgcaatagct
aaaattatcgagaaaagtaatatttcaaacctaattaaaaacgctaaaaaagaagcagct
tctatcttaaaagacgctaatttggaagctgaaaatatcaaaaaagacaaaattcttcaa
gcaaaagagcgttttatcgaacttaaatcggaacacgaacaagttattttagcacgtgat
aaaaaagtggctgaagtagaaaaacgtgtacgcgataaagaatctcaaatttctaacgaa
ctttctaaagctaaaaaagtaaacgaagattatgaagctaaaacagccgaatacaacaac
aaaattgaggttttagacaaaaaacaagctgaagttgacaaacttcacaaaagccaatta
cagcaattggaagtaatttctggtctttctgctgaagaggcaaaagagcaattggttgaa
ggtttaaaagctgaagctaaaacaaaagcaatgtctcacattcaagaaactattgaagag
gcaaaattaactgcacagcaagaagctaaaaaaatcatcataaacactattcaaagagtt
ggaacggaagaagcagttgaaaactgtgtatctgttttcaacattgaatctgacgatgta
aaaggacgcattattggtcgtgaaggacgtaacattagagctcttgaagctgcaactgga
gttgaaatcattgttgatgacacgccagaagctatcattctttcttgttttgatcctgtt
cgtagagaaattgctcgtttgtctttgcacaaattagtaactgacggacgtattcaccca
gctcgtatcgaagaagttgtagctaaaactgcaaaacaaattgatgacgaaattattgaa
gtaggaaaacgtaccgtaatcgacttaggaattcacggtttacacccagaattaattaaa
gtggtgggtagaatgaaataccgttcttcttacgggcaaaacttattacagcactcaaga
gaggtttctaaactttgcggtatcatggctgcagaattaggactaaacgtaaaactagct
aaaagagctggtttattacacgatatcggaaaagtgccagatacagaaagcgatttacca
cacgcacttttaggtatgcaatgggctgagaaatacggcgaaaaagaagaagtatgcaac
gcaattggagcgcaccacgatgagatcgaaatgaaatctttattgtctccgattattcaa
gtttgtgatgctatttctggagcaagaccaggtgctagacgtcaggttttagattcttac
atccagcgtctaaaagatcttgaagatgtagcttacggattcagcggagttaaaaatgct
tatgcaattcaagctggtagagaacttcgtgtaattgtagaaagtgaaaaagtttctgat
gataatgcagcaaacttatctttcgagatttcacaaaaaattcaaacagaaatgacttac
cctggacaagtaaaagttacagttatcagagaaactagagctgtaaatattgctaagtaa
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