Flavobacterium humidisoli: M0M44_09490
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Entry
M0M44_09490 CDS
T08925
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
fhu
Flavobacterium humidisoli
Brite
KEGG Orthology (KO) [BR:
fhu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fhu03032
]
M0M44_09490 (topA)
03400 DNA repair and recombination proteins [BR:
fhu03400
]
M0M44_09490 (topA)
Enzymes [BR:
fhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
M0M44_09490 (topA)
DNA replication proteins [BR:
fhu03032
]
Prokaryotic type
DNA Topoisomerases
M0M44_09490 (topA)
DNA repair and recombination proteins [BR:
fhu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
M0M44_09490 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
DUF4294
Motif
Other DBs
NCBI-ProteinID:
UPZ17569
LinkDB
All DBs
Position
2109092..2111608
Genome browser
AA seq
838 aa
AA seq
DB search
MAKNLVIVESPAKAKTIEKFLGSDFQVESSYGHIADLPSKEIGVDVENGFKPKYEVSPDK
KALVTKLKSLSKNAETVWLASDEDREGEAISWHLAEELKLDRKKTKRIVFHEITKSAILK
AIDNPREIDYNLVNAQQARRVLDRLVGYELSPVLWRKIKGGLSAGRVQSVSVRLIVERER
EIQSFNAVATYSIVAEFVNEAGKAFKAKLPKNFNTKKEAEDFLNQNIGSKYKVADLETKP
TKKSPTAPFTTSTLQQEAARKLYLPVGITMQLAQRLYEAGLITYMRTDSVNLSKEAMDAA
QAEIIKSYGKEFSKPRVFANKSKGAQEAHEAIRPTDMSRHTVNIDRDQARLYDLIWKRTL
ASQMSDAQLERTNVKIEADNHSEIFTASGEVLLFEGFLKVYLEGHDDDEEEQEGMLPALK
VNEKLANSYITATERYSRPPARYTEASLVKKLEELGIGRPSTYAPTISTIINRNYVEKGT
LEGVERNYTQLTLQNSKVGEKVLKENTGSDKGKLVPTDIGTIVTDFLVKNFGNILDYNFT
AKVEQDFDEIAEGNIDWAKMMQDFYNKFHPNVKEVEANAERESGERILGKDADGRQVSVR
LGKFGPMAQIGEADDEDKKFASLMADQNIGNITLEEALNLFLLPKSLGEYKGEEVEVSNG
RYGPYVRHGSVFISLPRGEDPLSVSKERAQELIDEKALADAPIAVYKGEAVQKGVGRFGP
FIKWNGLFVNVSKKYNFDNLSQADVEELIEDKLQKNIDKVVHNWEEEGIVVEKARWGRSV
ILKGKIKIELSKDVDATKLTLAQVQEMIAAKTPAKKTAAKKTTTAKKAPAKKTAAKKK
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaatttagtaatagtggagtcacctgcaaaggcgaaaacgatcgagaaattt
cttgggagtgattttcaggtggagtcaagttatggacacatagcagacttaccatcaaag
gaaataggagtagatgtagaaaatggttttaaacctaaatatgaagtttctccggataaa
aaagccttggtaacgaagctgaagtcactttctaaaaatgccgaaacggtttggttagca
tccgatgaggaccgcgagggagaggctatttcatggcacttggcggaagaattaaagcta
gatagaaaaaagaccaaacgtattgtttttcacgagattacaaaatctgcgatccttaag
gcaatcgacaatccaagagaaattgattataatttagtaaacgcgcaacaggcacgtcgt
gttctagaccgtttagtgggttatgaattatctccagttttatggagaaaaatcaaaggt
ggactttcagctggtcgtgtacaatctgtttctgtacgtttgattgtagaaagagaacgc
gaaattcaaagtttcaatgccgttgcaacctattctatagttgcagaatttgtaaacgaa
gcaggaaaagcttttaaagcaaaacttccaaaaaacttcaatactaaaaaagaagccgaa
gatttcttaaatcaaaacatcggttctaaatataaggtagcagatttagaaactaaacct
accaaaaaatctccaacagcgccttttacaacttctacattgcagcaagaagcagcaaga
aaattgtacttgccagttggaattaccatgcagttagcacagcgtctatacgaagccgga
cttattacttatatgagaaccgactcggtaaacctttctaaagaagcaatggatgctgca
caggcagaaattattaaatcttacggaaaagaattttcgaaaccgagagttttcgctaat
aaaagtaaaggagcgcaagaagcgcacgaagcaattcgtccgactgatatgtctcgtcac
actgtaaatattgaccgtgatcaagctcgcttatacgatttgatctggaaaagaacttta
gcttcgcaaatgagcgatgcgcaactggaaagaacaaatgtaaaaatcgaagcagataat
catagcgaaatttttacagcttctggagaagtattgctttttgaaggtttcttaaaagta
tatttagaaggtcacgatgacgatgaagaagagcaagaaggaatgcttcctgctttaaaa
gtaaacgaaaaactggcgaatagctatattacagccacagaacgatattcaagaccgcct
gcacgttacactgaggcatctttagttaaaaaattagaggaacttggaattggtcgtcca
tctacatacgcgccaactatttcgacaattatcaatagaaattacgttgaaaaaggaact
cttgaaggtgtagaacgtaattatacacagcttactttgcaaaatagtaaagtaggagaa
aaggttctgaaagaaaatacaggttctgataaaggaaaattggttccaacagatatcgga
actattgttactgatttcttggtaaagaattttggaaacattttagattataattttact
gctaaagttgaacaggactttgacgaaattgccgaaggaaatatcgattgggcaaaaatg
atgcaggatttctacaacaaatttcacccaaatgtaaaagaagttgaggcaaatgctgaa
cgtgaaagcggggaaagaattttaggaaaagatgcagacggaagacaagtttctgttcgt
ttagggaaatttgggccaatggcgcagattggagaagcagatgatgaagataaaaagttt
gctagcttaatggcagaccaaaatataggaaacattacacttgaagaagcattgaattta
ttcttgcttccaaaaagtttaggtgaatataaaggagaagaagtagaagtgagcaatggc
cgttacggtccttatgttcgtcacggaagcgtttttatttcattgcctagaggagaagat
cctttaagtgtttctaaagaaagagctcaggaattaattgacgaaaaagcacttgctgat
gcgccaattgcagtttataagggagaagccgtgcaaaaaggagtgggacgttttgggcca
ttcattaaatggaacggactttttgtaaatgttagcaaaaaatacaattttgataatctt
tctcaagctgatgttgaagaattgatcgaagataaacttcagaaaaatattgataaggtt
gttcataattgggaagaagaaggaattgtagtagaaaaagcccgttggggacgctctgtg
attctgaaaggaaaaatcaaaattgaattaagtaaagatgttgatgcaacgaaattgaca
ttggctcaagttcaagaaatgatcgcagcaaaaacaccagcaaagaaaactgctgctaaa
aaaacaacaacagctaaaaaagctccagctaaaaaaacggctgctaaaaagaaataa
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