Flavobacterium humidisoli: M0M44_10125
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Entry
M0M44_10125 CDS
T08925
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fhu
Flavobacterium humidisoli
Pathway
fhu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fhu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M0M44_10125 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fhu03021
]
M0M44_10125 (rpoC)
03400 DNA repair and recombination proteins [BR:
fhu03400
]
M0M44_10125 (rpoC)
Enzymes [BR:
fhu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M0M44_10125 (rpoC)
Transcription machinery [BR:
fhu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M0M44_10125 (rpoC)
DNA repair and recombination proteins [BR:
fhu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M0M44_10125 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UPZ17689
LinkDB
All DBs
Position
2251082..2255389
Genome browser
AA seq
1435 aa
AA seq
DB search
MMNNRNNKEKNPVKRFNKISIGLASPESILKESRGEVLKPETINYRTHKPERDGLFCERI
FGPVKDFECACGKYKRIRYKGIICDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLP
NKIGYILGLPSKKLDMIIYYERYVVIQAGIAKNADGESLQRLDFLTEEEYLNILDTLPQE
NQYLDDLDPNKFVAKMGAECIMDLLARIDLDALSYELRHSANNETSKQRKTEALKRLQVV
ESFRESNENRENRPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLK
RLMEIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQ
NLLGKRVDYSARSVIVVGPELKLYECGLPKDMASELYKPFVIRKLIERGIVKTVKSAKKI
IDKKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNAD
FDGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERIST
EDHKIIGQDLTFYSAEEVNIALNEGRLELNARVKIRAKDFNDAGELVYQIIQTTAGRVLF
NEVVPEAAGYINDVLTKKNLRDIIGHILSVTDVPTTAAFLDNMKDMGYKFAFRGGLSFSL
GDIRIPEQKTKLIADAREQVEGISTNYNMGLITNNERYNQVIDVWTSANAQLTELAMKNI
REDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEG
LSILEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNIEDCGTLRGVEVAALK
KNEEIVESLGERILGRVALQDVINPLTNEVMVKSGEQITEAIMRTIEASPIEKVEVRSPL
TCEALKGICAKCYGRNLATGKMTQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGISE
ESSIVTRFAGRLEIEDLKTVKGEDGEGNSVDIVVSRSTELKLVDEKTGIVLNTHNIPYGS
SIFVGDGETVAKGTVICKWDPYNGVIVSEFTGKIAYEDLEQGQSFMVEIDEQTGFQEKVI
SEARNKKLIPTLLVYGKEGELIRSYNLPVGAHLMVENGEKIKAGKVLVKIPRRSSKAGDI
TGGLPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIVIESKFGEIKKYLVKLSSQ
ILVQENDFVRAGVPLSDGAITPDDILRIQGPAAVQQYLVNEIQEVYRLQGVKINDKHFEV
VIRQMMRKVRVQDPGDTLFLEDQLIHTKDFIVQNDKLYGMKVVEDAGDSSVLKPGQIITP
RELRDENSLLKRTDKNLVVARDVITATATPVLQGITRASLQTKSFISAASFQETTKVLNE
AAVAGKVDDLEGLKENVIVGHRIPAGTGMREYDNTIVGSKDDYNEMMANKEEYIY
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atgatgaataacagaaacaataaagaaaagaatccagtaaaaagatttaacaaaatttct
attggattggcttcgcctgaatctatcttgaaagaatcaagaggagaggttttaaagcca
gaaacaattaactatagaactcacaaaccagagcgtgacggacttttctgcgaaagaatc
ttcggaccagtaaaagattttgaatgtgcttgtggtaagtataaaagaattcgttacaaa
ggtatcatctgtgaccgttgtggtgttgaagttactgagaaaaaagtacgtcgtgataga
gtaggacacatcaaccttgttgtgccaattgctcacatctggtacttccgttctcttcca
aacaaaattggttatatccttggtcttccatctaagaaattagatatgatcatttactac
gaaagatacgtagtaatccaagctggtattgctaaaaatgcagatggagaatctttacaa
agattagatttcttaactgaagaggaatatttaaatattttagatactcttccacaagaa
aaccaatatttagatgatttagatccaaataaatttgttgccaaaatgggagcagagtgt
atcatggatttattagctcgtattgacttagatgctttatcttatgaattaagacacagc
gctaacaacgaaacatctaaacaaagaaaaactgaagctttaaaaagattacaagttgtt
gagtctttccgtgagtctaatgaaaaccgcgaaaaccgtccagaatggatgatcatgaaa
gtggttccagttattccaccagaattacgtccgcttgtaccacttgatggaggtcgtttt
gcaacttcagatttgaacgatttatatcgtcgtgtaatcattcgtaacaatcgtttaaaa
agattaatggagattaaagctccagaagttatcttaagaaacgagaaacgtatgttgcaa
gaatctgtagattcattattcgataacacacgtaaagcttctgctgttaaaacagaatca
aacagaccattaaaatcattatctgactcattaaaaggtaaacaaggacgtttccgtcaa
aaccttttaggaaaacgtgtggattattctgctcgttcggtaattgtcgttggtccagag
ttaaaattatatgagtgcggattgccaaaagatatggcttctgaattatacaaaccattc
gttatccgtaaattgatcgaaagaggtattgtaaaaacagtaaaatctgctaagaaaata
attgataagaaagagcctgtagtttgggatatccttgaaaacgtaattaaaggacatcca
gtattacttaaccgtgctcctactttgcacagacttggtattcaagctttccaaccaaaa
ttaattgaaggaaaagcgatccagttacacccattagtatgtacggcattcaacgccgat
ttcgatggtgaccagatggcagttcacttaccattaggaccagaggctattttagaagct
caattattaatgttagcttctcacaatatcttgaaccctgcaaatggtgctccaattact
gtaccttctcaggacatggtcttgggtctatattatatgaccaaagagcgtatttctaca
gaagaccacaaaattattggtcaggatttaactttctactctgctgaagaagtaaacatt
gcattaaacgaaggaagattagaattgaatgctcgtgtaaaaattagagcaaaagatttt
aatgatgctggagaattagtgtatcaaattattcaaacaactgcaggacgtgtattattt
aacgaagtagtaccggaagcagctggatatatcaatgacgtattgactaagaaaaacctt
agagatattatcggacacattttaagtgtgactgatgtacctacaacggcagctttcttg
gataatatgaaagatatggggtataaatttgcatttagaggaggtttatcattctcttta
ggtgatattagaattccagaacaaaaaacgaagttaattgcagatgctagagagcaagtt
gaaggtatttcaactaactataacatgggtcttattacaaataacgagcgttacaaccaa
gttattgacgtatggacttcagcaaatgctcagttaacagaattagcaatgaaaaatatt
agagaagaccagcaaggtttcaactctgtatatatgatgcttgactctggggcgaggggt
tctaaggaacagattcgtcagttaactggtatgcgtggtttgatggctaagcctaaaaaa
tctactgccggtggtggtgagattattgaaaacccgattctttctaactttaaggaaggt
ctttctatccttgagtactttatttctactcacggtgctcgtaaaggtcttgcggatacg
gctcttaaaacggccgatgctggttacttaacaagaaggcttcatgacgtttctcaagat
gttattgttaacattgaagattgtggaactttaagaggtgttgaagttgcggcattgaag
aaaaatgaggaaatcgttgaatctttaggagagagaattttaggacgtgttgcattacaa
gacgttattaatcctcttactaacgaagtaatggttaaatctggagagcaaatcactgaa
gcaatcatgagaactatcgaagcttctccaattgaaaaagtagaagttagatctccatta
acttgtgaagctttaaaaggtatttgtgctaaatgttacggtagaaacttagctactggt
aaaatgacacaaagaggtgaagctgtcggagttattgcagctcagtctattggagagcca
ggtacacagttgacacttcgtacgttccacgttggaggggttgctggaggtatctctgaa
gagtctagtattgttacaagattcgcaggtagacttgaaattgaagatttaaaaacagtt
aaaggagaagacggagaaggtaactctgttgatatcgtagtttcacgttcgacagaatta
aaattagttgacgagaaaactggaattgttttaaacacacataacattccttacggttct
agtatctttgttggagatggagaaactgtagctaaaggaactgtaatctgtaaatgggat
ccatataacggtgtaattgtttctgagtttactggtaagattgcttacgaagatttagag
caaggacaatcgttcatggttgagatcgatgagcagactggtttccaagaaaaagtaatt
tctgaggctagaaacaaaaaattaattccaactttattggtttacggtaaagaaggtgaa
ttgattcgttcttacaacttaccagtaggtgcacacttaatggttgaaaatggtgagaaa
attaaagcaggtaaagtattagtaaaaatccctcgtcgttcttctaaagcgggcgatatc
acgggaggtttaccaagaattactgagttgcttgaggctcgtaacccttctaatccagca
gttgtatctgaaattgatggtgttgtttcttttggaaaaatcaaaagaggtaaccgtgag
atcgttatcgaatctaaatttggtgagattaaaaagtatttagttaaactttcaagccaa
atcttagtgcaagaaaatgacttcgtaagagcgggagttccactgtctgatggtgcaatt
acaccagatgatatcttaagaattcaaggtccagctgctgttcaacagtacttggtaaat
gaaattcaagaggtttaccgtttgcaaggggtaaaaattaacgacaagcactttgaggta
gttattcgtcaaatgatgcgtaaagtaagagttcaagatccaggtgatactttattctta
gaggatcaattaatccatactaaagatttcatcgttcaaaacgataaattgtacggtatg
aaggtagttgaagatgctggagattcttcagtgttgaaaccaggtcagatcattactcct
cgtgaattacgtgatgaaaactcacttttgaaacgtacagataaaaatcttgttgtagca
agagacgtaatcactgcaactgcgacgccagttcttcaaggtattacaagagcttcgtta
caaactaaatcattcatttctgcggcttcattccaggagacaacgaaagtacttaacgaa
gctgcagtagctggtaaagtagatgatctagaaggattgaaagaaaatgtaattgttgga
cacagaattcctgctggaactggtatgagagaatacgataacactatcgtaggatctaaa
gatgattacaacgaaatgatggctaataaagaagaatatatttattaa
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