Flavobacterium humidisoli: M0M44_13490
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Entry
M0M44_13490 CDS
T08925
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fhu
Flavobacterium humidisoli
Pathway
fhu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fhu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M0M44_13490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fhu03019
]
M0M44_13490
03009 Ribosome biogenesis [BR:
fhu03009
]
M0M44_13490
Enzymes [BR:
fhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M0M44_13490
Messenger RNA biogenesis [BR:
fhu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M0M44_13490
Ribosome biogenesis [BR:
fhu03009
]
Prokaryotic type
rRNA helicases
M0M44_13490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UPZ13762
LinkDB
All DBs
Position
complement(3155653..3157563)
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AA seq
636 aa
AA seq
DB search
MNKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFP
LIQKIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQARDIK
RGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDEKST
WLFSATMPQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAIAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERI
IKQKFEEKTIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINNVLEDLSKEELIKKM
VSVEFNRFITYYKKNRDISVQSGERRERGDSEPREFSNNGAVRYFVNIGSRDNFDWMSLK
DYLKETLDLGRDDIFKVDVKEGFSFFNTDPQHTDKVMDVLNNVQLEGRRINVEISKNDGG
GRRDHNNRGGGRNSGGSRREGNFAPRREGGFRSDRNSSSRDGGSREGGFRGDRNSAPRRE
GGFRSSAPRSEGGSDRAPRRSENFGDSSRPRRSRRD
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaatgaatcgttactgaaggcgattttagatcta
ggatttgaaaatccgtcagaggtacaggaaaaggcgattcccctattattggaaaaagac
acagatatggttgcgttggctcagacagggacagggaaaacggcagctttcggttttccg
ctaattcaaaaaattgatgctgacaacagaaacacacaagcattagttttatcgccaaca
cgagaactttgtttacagattaccaacgaacttaaaaactactcaaaatacgaaaaaggt
ataaatgtggtagcagtttacggcggggctagtattacagagcaagctagagacattaaa
agaggagcgcagattattgttgcaactccagggagaatgcaagacatgattaacagaggt
ttagttaacattaaaaatatagattactgtattttggatgaggctgacgaaatgttgaac
atggggttttatgaggatatcgtatctattttatcagatactccagacgaaaaaagcaca
tggttgttctctgcaactatgccgcaagaggttgctagaattgcaaaacaattcatgagc
gaaccagttgaaattactgttggagccaaaaattcaggttctgcaacagtttctcacgaa
ttttacttagtaaatgctcgtgaccgttacgaagctttaaaacgtttagccgatgctaat
ccagatattttctctgtagttttctgccgtacaaaaagagacactcaagctattgctgag
aagttaattgaggatggatatagcgccgctgcgttacacggagatttatctcaagcacaa
cgagatggtgtaatgaaatctttccgtggaagacaaattcagatgcttgtagctactgac
gttgctgcacgtggtattgacgttgataacgtaactcacgttgttaactaccaattacca
gatgaaattgaaacgtacaaccaccgttctggtcgtactggtagagctggaaaattagga
acttctattgttattgttacaaaaagcgagttgcgtaaaatttcttctatcgagagaatc
atcaaacaaaaattcgaagaaaaaacgattccatctggaattgaaatctgcgaaattcaa
ttattgcacctagcgaacaaaattaaagatactgaggttgatcatgaaattgacaactat
ttaccagcaattaacaatgttcttgaagatttatctaaagaagaattgattaagaaaatg
gtttcagtagaatttaaccgtttcattacttattacaagaaaaacagagatatttctgtt
caatctggtgaaagacgtgaaagaggtgattctgaaccaagagaattcagtaataacgga
gcagttcgttatttcgtaaacattggttctagagacaacttcgactggatgtcattaaaa
gattacttgaaagaaacactagatttaggtcgtgatgatatctttaaagtagatgtaaaa
gaaggtttctctttcttcaacactgatccacagcatactgacaaagtaatggacgtttta
aacaacgtacaattagaaggtcgtcgtattaatgttgagatttctaaaaatgacggagga
ggaagacgtgaccacaacaaccgtggtggcggacgtaattctggaggatctagaagagaa
ggcaacttcgctccaagacgtgaaggcggatttagaagcgacagaaactcatcttcaaga
gacggaggttcacgcgaaggaggttttagaggcgacagaaactcagctccaagaagagaa
ggtggtttcagaagctctgctccaagaagcgaaggtggttctgacagagcaccaagacgt
tcagaaaacttcggcgacagctcaagaccaagaagatctagaagagattaa
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