Fervidobacterium islandicum: NA23_02645
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Entry
NA23_02645 CDS
T04215
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fia
Fervidobacterium islandicum
Brite
KEGG Orthology (KO) [BR:
fia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fia03016
]
NA23_02645
Enzymes [BR:
fia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NA23_02645
Transfer RNA biogenesis [BR:
fia03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NA23_02645
Prokaryotic type
tRNA splicing ligases
NA23_02645
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
SoPB_HTH
Motif
Other DBs
NCBI-ProteinID:
AMW32301
UniProt:
A0AAI8CKZ5
LinkDB
All DBs
Position
573696..575111
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AA seq
471 aa
AA seq
DB search
MSVTGAEKEGKYVYRIKKTGSMRVDAIILADYETIDEEAIEQLKNVATLPGIVKAAYAMP
DIHWGYGFPIGGVAAFDAEDGVISPGGVGFDINCGVRMLVVDGDSDIVKRNLETLIKRIY
ENVPVGVGETSDLRFSKNDFKKIVEQGAKKVVEMGYGTAEDLLRIEDGGTLENADFSDVS
EEAFDRGKDELGTLGAGNHFIEIQQVEEVYDEEIATVFGIKKGDITILIHTGSRGFGHQI
ATDYIKYMRDNLKEHNKNLPDKQLINAPFKSEWGQAYYSAMNCAANYAFVNRQIITHLIR
KAFKSVVGMNVRLVYDVAHNIAKVEEYEIDGKRRKLIVHRKGATRAFGPGNPALADIFKK
TGQPVIIPGSMGTASYILVGTKKAEEMTFGSTAHGAGRALGRREATRELTVNHVMRELES
KGVKIMAKSKKGIVEEAPEAYKNVDKVVQIVDELGISLKVAKCIPLGVVKG
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtaacaggagctgaaaaagaaggaaaatatgtttataggatcaagaaaacaggc
agtatgcgtgttgacgcgattatccttgctgattacgagacgatagacgaagaagctatc
gaacaactcaagaatgtcgcaacattaccggggattgttaaagcagcatatgcaatgcca
gatatacactggggttacggattccccataggtggtgtggcagcatttgatgcagaagat
ggtgtaataagtccgggtggcgttggattcgatataaactgcggtgttagaatgctagtc
gtagatggtgactcagatattgtgaaaagaaatttggagactcttatcaaacgcatttac
gagaatgtaccagtcggagttggggaaacgagcgatttgaggttttcgaagaatgatttt
aagaaaatcgttgaacagggtgccaaaaaggttgtcgaaatgggttacggaacagcagaa
gatttgttacgaatagaagatggtggaacgctagagaacgccgatttttctgacgtaagc
gaagaagcgtttgacagaggcaaagacgaactcggaactcttggtgcaggaaaccacttc
attgaaatccagcaagttgaagaagtatacgacgaagaaatagcaactgtgttcggtatt
aagaagggagatataacaatactcatacacacaggtagcagaggatttggtcaccagata
gccacggattacataaaatacatgagggataatctaaaagaacataacaaaaatcttcca
gataagcaacttatcaatgcgccttttaagagcgagtggggacaagcttactacagtgcg
atgaactgcgctgcaaattacgcgttcgttaataggcaaattattacacatttgattaga
aaagcattcaaaagtgttgtgggaatgaatgtgaggcttgtctacgatgttgcgcacaac
attgcaaaggttgaggaatacgaaattgatggaaaaagaagaaagcttatcgttcacaga
aagggtgcaacacgagcttttggaccaggcaatcctgcacttgcagatatattcaaaaag
actggtcaacctgtcattatccccggtagtatgggaacagcttcgtacatattggttggt
acaaaaaaggctgaagaaatgacatttggctccactgcccacggagctggtagagcgctt
ggaagaagggaagcgacgagggaactgacggtgaaccatgttatgcgagaactcgaatca
aaaggtgttaaaataatggcaaagtccaaaaagggcatagttgaagaggctcctgaggcg
tacaagaatgttgacaaagttgttcaaattgttgatgaactcggaatatcactaaaagta
gccaagtgtattccacttggagtggttaaaggatga
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