Fervidobacterium islandicum: NA23_06335
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Entry
NA23_06335 CDS
T04215
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
fia
Fervidobacterium islandicum
Brite
KEGG Orthology (KO) [BR:
fia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fia03019
]
NA23_06335
Messenger RNA biogenesis [BR:
fia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NA23_06335
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
HDOD
Cas3_HD
tRNA_anti_2
DUF5494
CDC24_OB3
Motif
Other DBs
NCBI-ProteinID:
AMW32914
UniProt:
A0AAI8GDE1
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All DBs
Position
complement(1342983..1343966)
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AA seq
327 aa
AA seq
DB search
MNGFREALEKLRSPYVEELKNWIDKEIDGIYKIRSKKLQESKDGKKFLLLTLEDRTGSVR
AIDWYNAESNDEKLQVGHVVNVRGRVVYFEERVQINVLNEQDAVRRLSENEYDIERFVKS
VENVDEMYKSLLRLIDTIRDEDYKTILQRFFVEDKNFVEMFKSAPAGMRIHHAYKGGLLE
HSLNVAKLVDSICKIYGQLDRDLLVTGALLHDIGKVKEYMVNYNGIEVTTEGELMGHIVI
GVEMLSQKAKGIPYEKLLKLKHLIASHHGEFEWGSPVLPKTPEALVLHFVENMDSKVNRV
MQIIDKEDREKSWSEYDSNLSRRFFLK
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
gtgaacggatttagagaggctctcgaaaagctcagatctccctatgtggaggaattaaaa
aactggatcgataaagaaattgatgggatatacaaaattagaagcaagaagcttcaggaa
tccaaggacggaaaaaaattcttgcttttgactttggaagatcgaaccgggagtgttcga
gcgatcgattggtacaacgctgaatcaaatgacgaaaagctccaggttggtcatgttgtc
aatgtgagaggaagagtggtatatttcgaagagcgcgtgcaaattaacgtcttgaacgaa
caggatgctgtaagaagactttccgagaatgaatatgatatagaacgctttgtaaaaagt
gttgaaaacgttgatgagatgtataaatcactgctcaggctaatcgacaccattcgggat
gaggactacaaaacgattctgcaaaggttcttcgttgaggataaaaactttgtagagatg
tttaaaagtgcacctgcgggtatgaggatacatcacgcatacaaaggcgggttactggaa
cattctttaaacgtcgcaaaacttgtggatagtatctgcaaaatttatggccaactcgac
agagaccttcttgttacaggagcgcttctgcatgatattgggaaagtcaaagagtatatg
gtcaattacaacggcatagaggtcacaaccgaaggtgaattgatggggcatatagtcatc
ggagttgaaatgttgtctcaaaaagctaagggaataccatacgaaaagttgctgaaacta
aagcaccttatcgcatcgcatcacggcgaatttgaatggggttcgcctgtcttgccgaaa
acccccgaggcactcgtactccattttgttgaaaacatggattctaaagtgaatagagtg
atgcagattattgataaggaagatagagaaaagagttggagtgaatacgattccaatctc
agtagaaggttcttcctcaaataa
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