Fervidobacterium islandicum: NA23_10270
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Entry
NA23_10270 CDS
T04215
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fia
Fervidobacterium islandicum
Pathway
fia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NA23_10270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fia03400
]
NA23_10270
Enzymes [BR:
fia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NA23_10270
DNA repair and recombination proteins [BR:
fia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NA23_10270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
AAA_30
AAA_22
AAA_16
DUF3867
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AMW33572
UniProt:
A0AAI8CNH4
LinkDB
All DBs
Position
2199637..2202426
Genome browser
AA seq
929 aa
AA seq
DB search
MINKAMNEIVIVPTEKDCEIEGYYYIPDYDVLPYENLSPSWYVRSRRIFALHLAIQGKLK
GVCTLRSLLHFVMPPNVLKENTHLLKVGDRLSEPEKLFAKLGYERVFNVREGGTFSVRGE
IIDYFGPDGLPVRLELFGNVIEDIRKFNLKTQRSEESLESAILLPAREFVLNGEYFKSAG
EIILEPIENQLTGKFVSGTFLDYDVELYVKDRKSVIEHFTRFERELRKSMEEMGQDDKLR
DYKRFGIIDYDLVLSKAKELPIEKAQFVVRKPQEEEYIPSEPVISEDELQVGDIVVHKKY
GIARFNEIKKVDVNGVQREFLVLNFADSVLYVPIERIDLVEKYVGDEVNVKLDSLKKGTW
SRKVEKAKKNIEELVRDLVLIYHARSSVRGLSLPGDADLEEEFAKTFPFVETPDQLNAIS
EVLEDLASEKPMDRLLVGDAGYGKTEVAIRAIFRTIVSGKQAVLLAPTTILAKQHYDNLV
ARFKPFGINVALLNRFSTKKEREEILEGVESGKIDLLVGTHSVLRDVKFADLGLVVIDEE
QKFGVEQKEKFKKLRVNVNVLSMSATPIPRTLNMALSSLKDLSEIKTPPLGRKEIQVHIG
PFDERIIRLAILREIGRGGQVIYVHNRVNSIYGVYERLKELVPEANIVIAHGQQPKSEMK
RAIDAFYHKHADVLLCTTIVENGVDVPDANTLIVDDAHRYGLAQLYQLRGRVGRSDKIAF
AYFFHGRNVNDKVLERLYAIKSYQGPGSGMKIAMKDMEIRGVGAIFGVEQHGYVNDLGLK
YYLDLLNEAVMEYTGQVQSKIDTELEGIPGSIVIPEFYIYDPFERMRFYRRIASAISEQE
ILDIHEELVDRFGKMPESVENLLKYALLRIILWKRNVAKATISDVGLVVKFKSGKFEEIS
PSYIYNEKEDVYIFFVNLDELIEQSKVVV
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
ttgattaataaagcgatgaatgaaattgttatagttccaaccgaaaaagattgtgaaata
gaagggtattattatataccagattacgatgtgctcccttacgaaaacctgagcccttca
tggtatgttaggtctcggcgtatatttgcacttcaccttgcaattcaaggaaagttaaaa
ggcgtctgcacactacgttcccttttacactttgtgatgccaccaaatgttttgaaagaa
aatacacatctacttaaagttggggacagactttccgaacctgagaaactctttgcaaag
ctcgggtatgagagggttttcaatgtccgtgaaggcggaacgttttcggtaaggggagag
ataatagactatttcggaccagacggcttacctgtcaggctggagctttttggtaacgtc
atcgaagacattcgaaagttcaacctaaagacacagcgaagtgaagaaagtttagaaagt
gccattttattgccagcacgggaatttgtacttaacggcgagtatttcaaatcggctggc
gagataattttggagccaatagaaaaccagctcactggcaagtttgtgagtggaacgttt
ttagattacgatgttgaattgtacgtaaaagacagaaagagcgtcatcgagcactttact
cgatttgagcgtgaactacgtaagtcgatggaagagatggggcaagatgacaagctaagg
gattacaaacgctttgggataatagactacgacctagttttatcgaaggcgaaagaacta
cctattgaaaaggctcagtttgttgtaagaaagcctcaggaagaggaatacataccatca
gaacctgtaatctcagaggatgaactgcaggtaggcgatattgttgtccacaagaaatac
ggtattgcgaggttcaacgaaattaaaaaagtcgatgtgaacggtgtacaacgtgagttt
ttggtgttgaactttgccgattctgttctgtacgtacctatcgaaaggatagacttggta
gaaaagtacgttggcgatgaggtaaatgtaaagcttgactcacttaagaaaggtacttgg
tcgcgaaaggttgagaaggcgaagaaaaatatagaagagcttgttcgagatcttgtcttg
atataccacgcgcggagtagtgttagaggcttgtcattgccaggagatgccgaccttgag
gaagagtttgccaagacctttccgtttgttgaaacacccgaccagctgaacgcaatcagc
gaagtacttgaagacttggcgagcgaaaagccgatggaccgactgcttgttggagatgca
ggttatgggaaaacggaagtggccataagagcgatattcagaacaatcgtctccggtaag
caagcggtactccttgctccaacgacgatcttggcaaagcaacactacgataatctcgtg
gcaaggtttaaaccatttggaataaacgttgcactgctgaataggttctcaacgaaaaaa
gaacgcgaagaaattttagaaggtgtagaatcaggaaaaatagacttgcttgtcggaaca
cacagcgtactgcgcgatgtgaaattcgcagatttgggactggttgttatcgatgaagag
cagaaatttggagtagagcagaaagaaaaattcaagaaactgagggtaaatgtgaatgtt
ctttccatgagtgccacacctattccgagaacattgaacatggcactttcgagtttgaag
gacctatctgaaattaaaacgcctccgttaggaagaaaggaaattcaagtgcacataggt
ccatttgatgaaaggattataaggcttgcgatattgagggagataggtcgaggtgggcag
gtcatatacgttcacaaccgcgtgaactctatatatggggtttacgaaaggttaaaagag
ttggttccggaagcgaatattgtaatcgctcatggacagcaaccaaagagcgaaatgaag
agagcgatagatgcgttttaccacaagcacgcggatgtacttctttgtactacgatagtt
gaaaatggtgtagacgtacctgacgcaaatacgcttatcgtcgacgatgcccatagatat
ggacttgcacagttgtaccagctacgtggccgggtcggcagaagcgacaagatagctttt
gcctatttcttccatggaagaaatgtgaacgataaagtgttggaaagactttatgcgata
aaatcttaccagggtcctggaagtggtatgaaaatcgcaatgaaggatatggaaatcagg
ggcgtgggcgctattttcggtgtcgagcagcacgggtatgtcaacgacctcgggctcaag
tattaccttgacttacttaatgaagcggtcatggaatacacaggacaagtgcagagcaaa
atcgatacggaacttgaaggtattccaggaagcatcgtgataccggagttttacatatac
gacccgttcgagcgcatgagattctacagaaggatagcgtcagcgatcagtgaacaagaa
atactcgacattcacgaagaacttgtcgacaggtttggtaagatgccagaaagtgtagaa
aatctgctgaaatatgcactattgcgtataatactatggaaaagaaacgttgcaaaagct
acgatatcggatgtcggcctggttgtcaaattcaaaagtggaaagtttgaagaaatatct
ccaagttatatatacaacgagaaagaagatgtctacatctttttcgttaacttggatgaa
cttatagaacaatcaaaggtggttgtctga
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