Fibrella sp. ES10-3-2-2: A6C57_08130
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Entry
A6C57_08130 CDS
T04805
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fib
Fibrella sp. ES10-3-2-2
Pathway
fib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6C57_08130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fib03019
]
A6C57_08130
Enzymes [BR:
fib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A6C57_08130
Messenger RNA biogenesis [BR:
fib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A6C57_08130
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
Phage_integrase
DUF3834
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ARK10298
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All DBs
Position
1976099..1977673
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AA seq
524 aa
AA seq
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MNFNELAIISPILEALAEEGYTTPTPIQEQAIPLVNAGRDLLGCAQTGTGKTAAFSIPTL
QRLYTKKQSGQWSNKIKALILTPTRELAIQIDESLAAYGRHLDLRHAVIFGGVGQKSQTD
ALRNGIDILTATPGRLLDLMNQGFVNLKSIEFFVLDEADRMLDMGFIHDVRKVLAQLPAQ
RQSLFFSATMPPEIVKLADTILTNPAKVEVTPASSTADTVAQVVYMVEKDDKRSLLLHLL
EDKTIASALVFSRTKHGADKVAEFLNKHGVKTEAIHGNKAQNARQRALSNFKDHTTRVLV
ATDIAARGIDIDSLSHVFNYELPNIPESYVHRIGRTGRAGASGIAISFCETDERAYLKDI
QKLIGKTVPVAQDNPYKSDNLDPIEWAKPPKPEPKQGRGGRGPREGGQNSGGRNGQPQGR
GNDGRRDGARPAQGQPRSDVPRAEQPARLAGQPSTPNRTNSPRPENRPAGGNRNPRRDNR
NTQSNSNSAEDARWKPWTASLSTSPDRFDKPRESGNNGDRKKRY
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcaacgaattagcgattatttcgcctatccttgaggccctcgccgaagaagga
tacactaccccaaccccgattcaggaacaagccatcccgttagtaaatgcaggccgcgac
ctgctcggatgcgcccagacaggcaccggaaaaaccgccgccttttcgattccgaccctt
caacggctttatacaaagaagcagtcaggtcagtggtcgaacaagatcaaagccctgatt
cttacgccaacgcgcgaactcgccatccagatcgatgagagccttgccgcctatggtcgc
cacctggaccttcgccacgccgttattttcggtggtgttggtcagaaatcgcagacagac
gcccttcgcaacggtatcgacatcctgactgccacgccgggccgcctgctcgacctgatg
aaccagggatttgtgaacctgaaaagtatcgagtttttcgtgcttgatgaagcagaccgc
atgctcgacatgggtttcatccatgacgttcggaaggtactggcgcagttgccggcccaa
cggcaatcgctgtttttctcggctactatgccccccgaaattgtaaagctggctgacacg
atcctgacgaatcccgccaaggtcgaggttacgcccgcttcgtcgacggccgatacggta
gcgcaggtggtttacatggtggagaaagacgacaagcgtagcctgttgcttcacctgctg
gaggataaaactattgcttcggcgctggtattcagccgtaccaaacacggagccgataag
gtggccgagttcctgaacaagcatggtgtaaaaaccgaagcaattcacggcaacaaagcg
caaaatgcccgtcagcgtgcgttgagcaactttaaagaccacaccacccgcgtattggta
gccactgatattgcagcacgtggcatcgatattgatagcctgtcgcacgtattcaactac
gaactgccaaatattccggagagctatgtacaccggattggtcgtacaggtcgtgccggc
gctagtggcattgccatttcgttctgcgaaaccgatgagcgggcgtacctgaaagatatt
cagaagttgatcggaaaaaccgttccggtggcacaggataatccatacaagtcagataac
ctcgacccgatcgaatgggcgaaaccaccaaaaccagagcctaagcaagggcgcggtgga
cgtggcccacgtgaaggtggccagaatagtggcggtcgtaacggacaaccacagggacgt
ggcaacgatggccgcagagacggagcgcgtccggcacagggtcagccccgttcggatgta
cctcgcgctgagcaacctgcccgtctggctggtcaaccgtctacgccgaaccgaaccaac
agtccacggccagagaaccgccctgctggtggtaatcggaacccacgccgcgataaccgg
aatacacaaagcaactcaaacagcgccgaagacgcccgctggaaaccgtggacagcatca
ttgtctacgtcgcccgaccgctttgataagccgcgcgagtctggcaacaacggcgatcgg
aagaaacgctattaa
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