Candidatus Filomicrobium marinum W: BN1229_v1_0457
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Entry
BN1229_v1_0457 CDS
T03856
Symbol
rpoA
Name
(GenBank) RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
fil
Candidatus Filomicrobium marinum W
Pathway
fil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN1229_v1_0457 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fil03021
]
BN1229_v1_0457 (rpoA)
03400 DNA repair and recombination proteins [BR:
fil03400
]
BN1229_v1_0457 (rpoA)
Enzymes [BR:
fil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN1229_v1_0457 (rpoA)
Transcription machinery [BR:
fil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN1229_v1_0457 (rpoA)
DNA repair and recombination proteins [BR:
fil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN1229_v1_0457 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
IDH
DUF4249
Motif
Other DBs
NCBI-ProteinID:
CFX02595
LinkDB
All DBs
Position
1:436076..437170
Genome browser
AA seq
364 aa
AA seq
DB search
MILIPEAARRQAIFRTNRTRLIVTTQLLQKNWQNLIKPAKLDVVAGRDRTRVATIVAEPL
ERGFGMTLGNALRRVLLSSLQGAAIRTVQIDGVLHEFSSIPGVREDVTNIILNIKEISLK
VHSEGPKRMVLKKDGPGPARAGDIEVSSEVEILNPEHIICHLDQGASVRMELTADIGKGY
VAAERNRPEDAPIGLIPVDSLYSPVKKVSYKVEHTREGQILDYDKLTMTVETDGSISPED
AVALAARILQDQLAVFINFEEPKKPQEEQRHPELSFNAALLKKVDELELSVRSANCLKND
NIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKEVLASMGLHLGMEVPNWPPDNIDELAKRF
EDQY
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgattttgataccggaagctgcccgtcgccaggcgatcttccgaactaaccgaacgagg
ctgatcgtgaccacccaattgttgcagaagaattggcaaaacttaatcaagcccgcaaag
ctcgatgttgtcgccggacgtgatcgcacgcgtgttgcgacgatcgttgccgaacctttg
gagcgcggcttcggcatgacgctgggcaacgcgctacggcgcgtgctgttgtcctcgctg
cagggtgcagccatccggactgtgcagatcgacggcgtgctgcacgagttctcgtcgatc
cccggcgttcgtgaggacgtgacgaatatcattctgaacatcaaggaaatctcgctgaag
gtccactctgagggtccaaagcggatggttttgaagaaggacggcccaggcccggcacgc
gctggtgatatcgaggtcagctctgaggtcgagatcctcaaccccgaacatattatctgc
caccttgaccaaggcgcttcggtgcgcatggagctaacggctgacatcggcaagggctac
gtcgcggctgagcgcaatcggccggaagacgcgccgatcggtctgatcccggtcgacagc
ctctacagcccggtgaagaaggtctcttacaaagtcgagcatacccgcgaaggccagatc
ctcgactacgataagttgacgatgacggttgagaccgatggctcgatttctccagaagat
gcggtcgcacttgccgcgcgcatcctgcaggatcagttggctgtcttcatcaacttcgaa
gagccgaagaagccacaggaagagcagcgtcatccggagctgtcgttcaatgcggcgctt
ctcaagaaggtggacgagctggagctcagcgtgcgttctgccaactgcttgaagaacgac
aacatcgtctacatcggcgatctcattcagaagactgaagcggaaatgctgcgcacgccg
aacttcggccgcaagtcgctcaacgagatcaaagaagtgctggcctccatgggcctgcat
ctcggtatggaagtgccgaactggccgccggataacatcgacgagctggcaaagcgcttc
gaggatcaatactaa
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