Candidatus Filomicrobium marinum W: BN1229_v1_0518
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Entry
BN1229_v1_0518 CDS
T03856
Symbol
recJ
Name
(GenBank) putative single-strand DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fil
Candidatus Filomicrobium marinum W
Pathway
fil03410
Base excision repair
fil03430
Mismatch repair
fil03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BN1229_v1_0518 (recJ)
03430 Mismatch repair
BN1229_v1_0518 (recJ)
03440 Homologous recombination
BN1229_v1_0518 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fil03400
]
BN1229_v1_0518 (recJ)
DNA repair and recombination proteins [BR:
fil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BN1229_v1_0518 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BN1229_v1_0518 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN1229_v1_0518 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
CFX03315
UniProt:
A0A0D6JBK2
LinkDB
All DBs
Position
1:492565..494421
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AA seq
618 aa
AA seq
DB search
MGIASKRAILADAGESEAFLGVTASARGFTWRERLTGQGHALAAAISQRHGLPDLLGRVL
AARGVALDDVETFLDPSLKALMPDPSVLRDMDRTAARIAEAIVKGERVAIFGDYDVDGAC
SSALMARYFKSHGLSARIYIPDRLFEGYGPNVQAIEGLIKDGAQLIVTVDCGTTSFEPLA
HATKLGADVLVIDHHQSDETLPDVVAVVNPNRQDDVCGQGHLCAAGVVFLVLVAVTRELR
RRGHYAQGTTEPALLELLDLVALATVCDVVPLVGLNRAYVTKGLQVMRQRRNLGLRALFD
AAGLDQAPTPYHLGYILGPRINAGGRIGDSALGARLLSLDDGAEAQRIAETLDRLNRERK
AIETETLQEAMAEAERCVEEQPDLPVIVLGAENWHKGIVGLVASRLTERFHRPSCVISWT
RDGGDGAVTGTGSLRSVAGVDIGRAVRAATASGLLLKGGGHAMAAGLTVAQDNLEALRTF
FMDELAKGAKQARETAGLDHDGALTPQSANDQILALIERAGPYGQGNPQPRFAFPAHRVK
FAKVVGDAHVRAIIEAGDGSRLDCIAFRAVGQPLGDLLLEANGGFPIHVSGHLRRDTWGG
RNRIELMIEDAADPRKQS
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgggtattgcgagcaagcgggcgatccttgcggatgcgggggaatcagaagctttcctg
ggtgtgacggcttcggcgcgtgggtttacgtggcgtgagcggttaacgggacaggggcat
gcgttggctgctgcgatcagccagcgtcacggattacccgacctactggggcgtgtcctc
gcggcccggggcgttgccctcgatgacgtcgagacctttctggatccgtctttaaaagca
ttgatgcccgatccgagcgttctgcgcgatatggatcgcaccgcggcccggattgcggag
gcgatcgtcaaaggcgagcgcgttgcaatctttggcgactacgacgtcgatggggcctgc
tcgtcggcgctcatggcccgatatttcaagagccatggtctatcggctcggatttatatt
cccgatcggctgtttgagggatacgggcccaacgttcaagccattgaagggctgatcaag
gacggcgcgcaattgatcgtgacggtcgattgcggaacgaccagttttgagcctctggcg
cacgcgacaaagctcggcgcggatgtgttggtgatcgatcaccaccagtctgacgagacg
ctcccggatgtcgtcgctgtcgtgaaccctaaccgtcaagatgatgtttgcggtcagggg
cacttgtgtgccgctggcgttgtgtttcttgttctggtggcggtcacgcgcgagctccgt
cgtcgcggtcattatgcgcagggcactactgagccagctttgctggaacttctagatctg
gtggcgttggccacggtgtgtgacgtggtcccgttggttgggcttaaccgcgcttatgtg
accaaaggtttgcaggtcatgcgccagcggcggaaccttgggcttcgggcgttattcgat
gctgccgggctcgatcaggctccgacgccgtatcatctgggttatattctcggtccccgc
attaatgcggggggccgcatcggcgactcggctctgggcgcgcggttgttgagcctggac
gatggtgctgaggcgcagcgtatcgcggaaacgcttgaccgtcttaatcgcgagcggaag
gccattgagaccgaaacacttcaggaggctatggctgaggctgagcgctgtgttgaagag
cagcccgatctgccagtgatcgttctgggagcggaaaattggcataaaggtatcgttgga
ttggttgcgagccggttgactgagcgcttccatcggccatcgtgtgtcatctcctggacg
cgcgatggcggggacggagcggtgacgggcacagggtcgctgcgttccgtcgctggtgtt
gacattggccgggcggtgcgtgctgcaacggcttccggtttactgctgaaaggcggcggc
catgccatggcggcaggattaaccgtcgcacaggataatcttgaagctctccgtaccttt
ttcatggatgagttggcgaaaggtgcgaagcaggcgcgtgaaacggcaggtctcgaccat
gatggggcgttgacgccgcaatcggccaacgatcagattttggcgttgatcgagcgcgct
gggccgtatggtcaggggaatccgcaaccccgctttgcctttcctgcgcatcgcgtgaag
tttgccaaggtggttggtgatgcacatgttcgcgcgatcatcgaagcgggagatggatct
aggctcgattgcatcgcttttcgcgccgttgggcagccgctgggcgatttattgctcgaa
gctaatggcgggtttcctattcacgtcagcgggcatttgcggcgtgatacgtggggcggg
cgcaatcggattgagttgatgattgaagatgcggcggacccgcgcaaacaaagctga
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