Candidatus Filomicrobium marinum W: BN1229_v1_2239
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Entry
BN1229_v1_2239 CDS
T03856
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
fil
Candidatus Filomicrobium marinum W
Pathway
fil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN1229_v1_2239 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fil03019
]
BN1229_v1_2239 (pnp)
03016 Transfer RNA biogenesis [BR:
fil03016
]
BN1229_v1_2239 (pnp)
Enzymes [BR:
fil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BN1229_v1_2239 (pnp)
Messenger RNA biogenesis [BR:
fil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BN1229_v1_2239 (pnp)
Transfer RNA biogenesis [BR:
fil03016
]
Prokaryotic type
tRNA degradation factors
BN1229_v1_2239 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
KH_2
Motif
Other DBs
NCBI-ProteinID:
CFX27776
UniProt:
A0A0D6JGN0
LinkDB
All DBs
Position
1:2167398..2169587
Genome browser
AA seq
729 aa
AA seq
DB search
MFDIHRVEIDWGGRPLRLETGHMARQADAAVYAQYGETSVLATVVAAKQPKPGIDFFPLT
VNYQEKTYAAGKIPGGYFKREGRPTEKETLTSRLIDRPIRPLFVQGFKNEVQVIVTVLSH
DMENDPDVLGMVAASAALTLSGVPFLGPIAAARVGRINGELVLNPMLDEMAESELDLVIA
GTEDAVMMVESEAKELGEDVMLKAVMFGHEHFQPVIQAIIKLAETAAKEPWDITLPDTGK
YKEAVRAIAEADLKVAFSTPEKQKRNDMVAAVKEKVFAEIEVPEDAPEDKGLLASAFKAL
ESDIMRSSVVDTGHRIDGRDLKTVRPIMSEVDVLPRTHGSALFTRGETQALVVATLGTGE
DEQFVDSLEGTRKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLMPTAEE
FPYTIRVVSEITESNGSSSMATVCGTSLALMDAGVPLKSPVAGIAMGLIKEGDKFAVLSD
ILGDEDHLGDMDFKVAGTTNGVTSLQMDIKITGITEEIMRVALDQARDGRMHILQEMSKA
LTDARSELGEHAPRIETIQIPTDKIREVIGSGGSVIRSIVEESGAKIDINDDGTVKIAAA
KRESIEAALSRIRSITTEPEVGTIYKGKVVKVMDFGAFVNFFGARDGLVHISQLSQGRPE
TVSEVVKEGQEVYVKLLGFDDRGKVRLSMKVVDQSTGQEIPRAEGEAEDTGGGDRGDRPR
RDRRPRRDA
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacattcatcgcgtggaaattgactggggggggcgtccgctgcgcctcgagacg
ggccacatggcgcgccaggccgacgccgccgtttatgcacagtacggtgagaccagcgtg
ctcgcgaccgtagtcgctgccaagcagcccaagccgggcatcgactttttcccgttgacc
gtaaattaccaggaaaagacctacgcggccggcaagatccccggtggttatttcaaacgc
gaaggccggccgacggaaaaggaaacgttgacgtcgcggctcattgaccgccccattcgc
ccgctgttcgtgcagggcttcaaaaacgaagttcaggtcatcgtcaccgttctttcccac
gacatggagaacgatcctgacgttctcggcatggtcgctgcgtctgcagcgctgacgctg
tccggcgttcccttcctcgggccgatcgctgcggcacgcgttggtcgcatcaatggtgag
cttgtcctcaatcccatgctggacgagatggccgaaagcgagctggatctcgtgatcgca
ggcaccgaagacgcggtcatgatggtcgagtctgaagccaaggaactgggcgaagacgtt
atgctaaaggccgtgatgttcggccatgagcatttccagccggtcatccaggccatcatc
aagctggctgagactgccgccaaggaaccctgggacatcacgcttcccgacacgggcaag
tacaaggaagctgtccgcgccattgctgaggcagatctaaaggttgccttctcgacgccc
gagaagcaaaagcgcaacgacatggttgccgccgtcaaggaaaaggtcttcgcggaaatc
gaagttcctgaagatgcgcctgaagacaagggtctgcttgccagcgcattcaaagcgctc
gagtccgacatcatgcgctcatccgtggtcgacacggggcatcgcatcgacggacgcgat
cttaagacggttcgcccgatcatgtcggaggttgatgttctgccgcgtacgcatggctcc
gcgctgttcacgcgtggtgagacccaggctctggtagtggcgacacttggcaccggtgaa
gacgagcagtttgtggattcgctcgaaggaacgcgcaaggagcgcttcctgcttcactat
aacttccccccctactccgtgggtgaaacgggccgtatggggagccccggccgtcgtgaa
atcggtcacggcaagctcgcatggcgcgccgtgcatcctctgatgccgacggcggaggaa
ttcccctacaccatccgcgtggtgtccgaaatcaccgaaagtaacgggtcgtcttcgatg
gcgacggtgtgcggcacgtccttggcacttatggacgctggcgtcccgctcaagtcgccc
gtcgccggtattgccatgggcttgatcaaggaaggcgacaagttcgccgttctctccgac
attctcggcgacgaagaccacctcggcgatatggacttcaaagtcgcgggtacgaccaac
ggcgtcacttcgcttcagatggacatcaagattaccggcatcacggaagagattatgcgg
gtggcacttgatcaggccagagatggccgcatgcatatccttcaagagatgtcgaaggct
ctgacggatgcgcgttcggaactgggcgaacatgctccacgtatcgaaacgatccagatc
ccgacggacaagatccgcgaagtcatcggttcgggtggctcggttattcgttcgatcgtc
gaagagtcgggcgccaagatcgatatcaatgacgacggtacggtgaagatcgcagccgct
aagcgtgagtcgattgaagcagccctgagccgcatccgctccatcaccaccgagcctgag
gttggcacgatctacaagggtaaggtcgttaaggttatggacttcggtgcctttgtgaac
ttcttcggcgcccgcgatggtctggttcacatttcgcaactgagccagggtcgtcctgaa
accgtcagtgaagtggtcaaggaaggtcaggaagtttacgtcaaactccttggcttcgac
gatcggggtaaggttcgcctgtccatgaaggttgtcgaccagtccacgggccaggaaatt
ccccgtgccgaaggcgaagctgaagatacaggtggtggagaccgtggagatcgtccgcgc
cgtgaccgccgtccacgccgagatgcgtaa
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