Candidatus Filomicrobium marinum W: BN1229_v1_2982
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Entry
BN1229_v1_2982 CDS
T03856
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fil
Candidatus Filomicrobium marinum W
Pathway
fil03030
DNA replication
fil03430
Mismatch repair
fil03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN1229_v1_2982 (dnaE)
03430 Mismatch repair
BN1229_v1_2982 (dnaE)
03440 Homologous recombination
BN1229_v1_2982 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fil03032
]
BN1229_v1_2982 (dnaE)
03400 DNA repair and recombination proteins [BR:
fil03400
]
BN1229_v1_2982 (dnaE)
Enzymes [BR:
fil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BN1229_v1_2982 (dnaE)
DNA replication proteins [BR:
fil03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BN1229_v1_2982 (dnaE)
DNA repair and recombination proteins [BR:
fil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BN1229_v1_2982 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
HHH_3
Motif
Other DBs
NCBI-ProteinID:
CFX41662
UniProt:
A0A0D6JIH5
LinkDB
All DBs
Position
1:complement(2904741..2908322)
Genome browser
AA seq
1193 aa
AA seq
DB search
MNAPTPSSVTAKPVAATAQPGFVHLRVHSAYSLLEGALPIGKLTGLAATHGYPALGLTDT
NNLFGALEFSEKIAGAGIQPIVGATLSVDFEDGEKDELRRAERPVGFARDGYLALMAASE
TGYANLMKLVSAAHLDVADGEPPHVKFSALCELAEGLIVLTGGPDGPIDTALAQDRQQLA
HERLTKLRAAFGDRLYVEIQRHGVRVEKTNEPQLLQLAYDLEIPIVATNQAYFATPDDYE
AHDALICIAEGSYVVEDNRRRLTREHYFKSREEMIQTFADLPEALANTVEIAQRCHYRPL
GRKPILPRFVASLEGKTEQDLLEEEAAELKRQAEEGLERRLAAHPLAAGFTREDYEKRLA
YEVDVISKMKFPGYFLIVSDFIKWSKSQGIPVGPGRGSGAGSLVAYALTITDLDPLRFGL
LFERFLNPERVSMPDFDIDFCQDRRDETIRYVQEKYGADRVAQIITHGKLQARAVLRDVG
RVLQMPYGQVDKLCKLVPNNPANPVTLAEAIETEPRLQEERDAEPIVAQLLEKAQKLEGL
YRHASTHAAGMVIGDRPLNELVPLYRDPKSQMPVTQFNWKMVEAAGLVKFDFLGLKTLTV
LQKAVEMVERCRGIKIDLSALPLDDRKSYELLARADTVGVFQLESTGMRESLKRLKPDRF
EDIIAMVALYRPGPMDNIPTYINRKHGEEPVDCLHSMLEGILSETYGVIIYQEQVIQIAQ
VMGGYTLGQADMLRRAMGKKDKAEMARHEARFIEGAVERGVKKADAAYIFELVNKFAGYG
FNKSHAAAYALVSYHTAYLKANYREEFLAASMTLDMANTDKLAVFVAEARRSGIEIKPPC
VNASEVEFLAEPSPEEAPSGPQTARGAIRYALAALKNVGPAAVETIVAAREENGRYKSLA
DFASRLNPKAVNKRAIEMLAQSGGLDALEPDRAIVCANADLILAAAQRRDADAAAGTNDL
FGLGETEPTLALRPAKGWTPLERLENEFASVGFYLSGHPLDQYAMVLEKLGVRRYAEFEL
ATAKGATSARLAAIVVSARERRSAKGNKFAFAMFSDASGQFEAVIFSDTLAAGRDLLQAG
TPVLVTVEAERDGDTVKMRVQRLESLDAATAAIDRGLLLRFSPAHIKNADATFDELKSYL
KPPAPGARGGQVRFVLPVKDRELEFALPGKYDVSPAQAGILATLRGIEQIVEI
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctccaactccatcctccgtgaccgccaaaccggtagctgcgacggcgcagcca
ggttttgtgcatctgcgggtgcattctgcttactcgctactggaaggcgccttgccgatc
ggaaagctcacgggcttggccgccacgcatggctatccggctttgggacttacggatacg
aataatctgtttggcgccctagagttttcagaaaagatagccggagccggcattcagccc
atcgtcggcgcaacgctgagcgtcgattttgaggatggggaaaaggatgagctgcgccgc
gccgaaaggcccgtcggctttgcacgagatggctaccttgcactgatggcggcctccgag
accggctacgcaaacctcatgaagttggtcagcgcggcgcatttggatgtggctgatgga
gagccaccgcatgtgaagttttctgctctctgcgaactggccgaagggcttatcgtcctc
acaggcggccccgacggaccgatcgatacggccttggcgcaggatcgacagcaactcgcc
catgaacggctgacaaagctgagagcggccttcggcgatcgtctgtacgttgaaattcag
cggcacggtgtccgcgtcgaaaagacaaacgagccacaacttctgcaactggcgtatgat
cttgaaattccaatcgttgccaccaaccaggcctacttcgcgacgccggatgactatgag
gcccacgatgccctgatctgcatcgctgaagggtcctacgtcgttgaagacaaccggcgg
cgcctgacgcgggagcattacttcaaatcccgcgaggagatgattcagacattcgcggac
cttcctgaggccctggcgaacaccgttgagatcgcacagcgctgccattaccggccgctc
ggccgcaagccgattttgccgcggttcgttgcaagcctggaaggcaagactgagcaagat
ctgctcgaagaggaggccgccgaacttaaacgtcaggcggaagagggtctggagcggcga
ttggcggctcatcctctcgcggcgggttttactcgggaagattacgagaagcggcttgcc
tacgaggttgacgttatctcgaagatgaagttccccggctactttctcatcgtttctgac
ttcatcaaatggagtaagtcgcagggcatcccggtgggtcctgggcgcggctccggcgcg
ggctcgttggttgcttacgcgctgacaattacagacctcgatccgttgcggtttggcctt
ctgttcgaacgcttcctgaaccccgaacgcgtctcgatgccggactttgacatcgacttc
tgtcaggaccggcgtgacgaaacaatccgctacgtgcaggaaaagtatggggcggatcgt
gtcgcccagatcatcacgcacggtaagctgcaagcacgcgcggttctacgcgacgtcggc
cgcgtgctgcagatgccgtatgggcaggtcgacaagctctgcaagctcgttcccaacaac
ccggccaatccagtcacattggcggaggcgatcgagaccgaaccacgtctccaggaggag
cgagatgccgaacccatcgtcgctcagcttctagaaaaagcgcagaagcttgaggggctt
taccgtcacgcgtcgacgcacgccgctggtatggtgatcggggaccggccgctcaacgaa
ctcgtccccctctaccgcgatccgaaatcgcagatgcccgtcacccagttcaactggaag
atggtggaggccgcgggcctcgtgaaattcgacttcctcggcctcaaaacgctgacagtg
ctgcagaaggccgttgaaatggtcgaacgctgtcgaggcataaagattgatctttcagcg
ctgccgctcgacgatcgcaagagctacgagcttctagctcgggctgatacggtcggtgtg
ttccagttggaatccacgggcatgcgcgagagcttgaagcgtctcaagcccgaccgcttc
gaagatattatcgctatggttgctctctatcggcctggcccgatggacaacatccccacc
tacatcaatcgcaaacatggcgaagagcccgttgattgtctccattcgatgctcgagggc
atcctttcggaaacctacggcgttatcatctaccaggagcaggtcattcagattgcccag
gtgatgggcggctacacgcttggtcaagccgacatgcttcggcgcgccatgggtaagaaa
gacaaagccgagatggcgcgccacgaggcgcggttcattgagggggccgtcgagcgcggt
gtgaagaaagccgacgcagcttatatctttgaactggtcaacaaattcgccgggtacggc
ttcaacaaatctcacgccgccgcctacgcgctggtcagctatcacacggcctacctcaaa
gcgaactaccgcgaagagtttcttgcggcgtcgatgacgctcgatatggccaacaccgac
aagctcgctgtgtttgtcgccgaagcacgacgaagcggcatcgagatcaagccaccgtgt
gtgaatgcgtccgaggttgagtttctcgctgaaccctcacccgaggaggcaccgtcaggg
cctcagactgcacggggagcaatccgctatgctctcgcggcgttgaagaacgtaggtccg
gccgccgtcgaaaccatcgtggcggcgcgtgaggagaacggccgctataagtcattggcc
gactttgcgagccgcctgaatccaaaggcggtcaacaaacgcgcgatcgaaatgttggca
cagtcgggcgggctcgacgcgctcgaacccgatcgcgcgatcgtgtgtgcaaatgccgac
cttatcctcgcagcggcacagcggcgcgatgccgatgcagcagcgggcacaaacgacttg
ttcggattgggcgaaaccgagcccacattggcattgcgccccgccaaaggctggacgcct
ttagagcgtttggaaaacgagtttgccagtgtcgggttctatctgtctggtcaccccttg
gaccagtacgccatggttctcgaaaagctcggcgtccgccgctatgcggagttcgagctc
gcaacggcgaagggggcaacctcggctcgacttgcggccatcgtagtatcggcgcgcgaa
cggcgctcggcgaagggaaataagtttgcctttgcaatgttctcggatgccagcggtcag
ttcgaggctgtcatcttctccgataccctggctgccggacgcgatctgctccaggcgggc
acgcccgttctcgtgaccgtcgaagccgaacgcgatggcgacacggtcaaaatgcgcgtc
cagcgtctcgaaagcctggatgcggccacggcggccatagatcgtggactgttactgcgc
ttcagcccagcccacatcaaaaacgccgatgcaactttcgacgagttgaaaagttacctc
aagccacccgcgcccggcgcgcgcggcggacaggtgcgttttgtgctgcccgtcaaagac
cgtgagctagagttcgctcttccggggaaatatgacgtttccccagcccaggcaggaatc
ttggcaaccttacgtggcattgagcagattgtagaaatctga
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