Candidatus Filomicrobium marinum W: BN1229_v1_3001
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Entry
BN1229_v1_3001 CDS
T03856
Name
(GenBank) Beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fil
Candidatus Filomicrobium marinum W
Pathway
fil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN1229_v1_3001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fil03019
]
BN1229_v1_3001
Messenger RNA biogenesis [BR:
fil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN1229_v1_3001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
CFX42029
UniProt:
A0A0D6JIF6
LinkDB
All DBs
Position
1:complement(2925434..2927143)
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AA seq
569 aa
AA seq
DB search
MARKPANGEDELVFLALGGLGEIGMNAYLYGVGAKKSRKWLMVDLGITFPGEGEPGVDVV
LPDLRFIEAQRDALAGIVITHAHEDHIGAVIELWPSLQVPIYATPFTVGMLRAKLAQFGG
QMAIEINEIPVGGRFQAGPFDVELVSMAHSIPETSGLILRTSVGTALHTSDWKIDPEPMT
GEPTDAAKLQALGAEGVHAMICDSTNALREGISPSESKVARSLTEIIKKATHRVAVTTFA
SNVGRVKAVAEAATASGRQLVVAGRALHRVIEVAKETGYLPEKLQYLDQQQFKYIDRSDV
VLLLTGSQGESRAAMARVADNEHPDIQLSKGDLVIFSSRNIPGNEKAVGRIQNKLAQIGC
DVLTDNEALVHVTGHPRRDELKQLYSWIKPEVAVPMHGEARHLREHARLATNAGVPQVVS
PLNGDIVRLAPQPAEILENVPTSRLYRDGRLIIPAEEGPVRERRKLSVVGIVVVSIALSR
RGIMIGEADLAMDGIPFVTEDGDAMEDVALDAVDATMASIPVARRKDHEMVRDAVRRAVR
SSIYEEWGKKPIVKVLLHVIDQQSAPRSK
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcaaacccgccaatggcgaagacgaactcgtattcttagccctcggcgggctg
ggcgaaatcggtatgaacgcctacctgtacggggtcggcgcaaagaagtcgcgcaaatgg
ctgatggtcgatctggggattacgtttcccggagagggcgagccgggcgttgatgtggtg
ctgccggatctgcgtttcatcgaagcgcagcgagatgcgctcgctgggatcgttatcacg
cacgcgcacgaagaccacattggtgccgtcatagagctatggccgagccttcaggtcccg
atttatgcaacgccgttcacagtcggaatgttgcgcgcaaagttggcgcagttcggcgga
caaatggccatcgagattaacgagatcccggtcggcgggcgctttcaggctggccccttt
gacgttgagttggtctccatggcccactctattccggaaacctccggcctgattttgcgc
acatccgtcggcacggctttgcacacgagcgattggaagatcgatcccgagcctatgacg
ggcgaaccaaccgatgccgcgaagctccaggctctcggagccgagggcgtccacgcgatg
atctgcgattcaaccaacgccttgcgggaagggatctctccttccgaaagcaaggttgcg
cggtcgttgaccgaaatcatcaaaaaggccacgcatcgcgtcgctgttacgaccttcgcc
tcgaatgtcggtcgcgtcaaagccgtcgccgaggcagccacagcatccggccgacaactc
gtcgtcgcgggccgcgccctgcatcgcgtgatagaggtcgcgaaagaaaccggctatctg
cctgagaagctgcagtatctggatcagcagcaattcaaatacatcgaccgctccgacgtc
gtgttgctcctgaccggaagccagggagagtcccgcgcggcgatggcgcgcgtagcagac
aacgaacatccagatatacaactctccaagggcgacctagtgatcttctcgtcccggaac
attcccggaaacgaaaaggcagtgggccgcatacaaaacaagctcgcgcaaataggttgc
gacgtgctcacagataatgaagcgctcgtgcacgttacgggccacccacgccgcgatgaa
ctcaagcagctttacagctggatcaaaccggaggtggccgtgccgatgcacggagaagca
cgccatctacgagagcacgcgcgcctagcaaccaacgccggcgtgccgcaggttgtgagc
ccattgaacggcgatatcgttcggctcgcaccgcagccagccgagatcttagagaacgtc
ccaaccagccgactctatcgcgatggccgtttgatcattcccgctgaagaaggtcccgtc
cgcgagcgccgcaagctttctgtcgttggaattgtggtggtatcgatcgccttgtcccgt
cgtggcatcatgattggcgaagccgatctcgcgatggatggtatccccttcgttacggag
gatggcgatgctatggaagatgttgcgctcgatgccgtcgatgccacaatggccagcatt
ccggtggcaagacgcaaggaccacgagatggtccgtgatgcggttcgccgtgcggtacgc
tcctctatctatgaggagtggggaaagaagccgatcgtaaaagtattgctacatgtgatc
gaccagcagtcggcgccccgctcgaaataa
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