Candidatus Filomicrobium marinum W: BN1229_v1_3044
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Entry
BN1229_v1_3044 CDS
T03856
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fil
Candidatus Filomicrobium marinum W
Pathway
fil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN1229_v1_3044 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fil03019
]
BN1229_v1_3044 (rhlE)
Enzymes [BR:
fil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN1229_v1_3044 (rhlE)
Messenger RNA biogenesis [BR:
fil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN1229_v1_3044 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
NAT10_TcmA_helicase
Utp25_C
AAA_30
Fe-ADH
AAA_22
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
CFX42815
UniProt:
A0A0D6JII0
LinkDB
All DBs
Position
1:2973798..2975300
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AA seq
500 aa
AA seq
DB search
MTSFHELGLCTALLEVLDAEGYTNPTPIQAQAIPSVLAGKDLLGIAQTGTGKTAAFSLPI
LQLLSQNKRAPIRRGCRVLVLSPTRELASQIGDSVKTYGRKLGISQTVVFGGVPAGPQRR
AMARGVDVLIATPGRLIDHMQEGDIDLSATEFLVLDEADQMLDLGFVKPIRRVVSFMPRQ
RQNLFFSATMPTDIGKLAGELLTDPIKVSVTPESTTVERIAQRVIHVERPRKRALLLDLL
ADQGMTRTLVFTRTKRGADRVARQLEVANIPAAAIHGNKSQSQRERALHAFRNAKIRVLV
ATDIAARGIDIDQVSHVINFELPEVPEAYVHRIGRTARAGTSGVAISFCDGEERGLLRDI
ERVTRQKIPSEDRRGDQALAVRLPEVREPERGPARGAAGRQGQPHRFSRNGGPRRRDGHA
EGRADQLNGAPAPRAPGHKRADDNASARPERAHRGSPHAHAHHRGEGQGSGGGHRANQNR
PRRGGGGRPWTSEKNVERAQ
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
ttgacttcttttcatgaacttggcctttgcaccgcgcttctcgaagtgctcgacgccgaa
ggctacacaaacccgacgccaattcaggcgcaagctattcccagtgtcctggcaggcaag
gatttgctcggtatcgcacaaaccggtactggcaagaccgctgccttttctttgcccatt
ctgcagctcctaagccagaataagcgcgcgcctatccggcgtgggtgccgtgtactcgtc
ttaagcccgacccgcgaactggcaagccagatcggagattcggtcaaaacgtacggccgc
aagcttgggatctcgcaaacagtagttttcggtggcgttcccgccggtccgcaacgacgc
gcaatggcgcgcggcgttgatgtgctgatcgcgacgcctggtcggcttatagaccacatg
caggaaggcgacatcgatctgtcggcaacagaattcctggtactcgatgaagccgatcag
atgctcgacctcggcttcgtgaagcctatccgtcgcgtcgtctcttttatgccgcgacaa
cgacaaaacctgttcttctctgcgacgatgcccacagacatcggcaaactcgcaggcgag
cttctaaccgatcccataaaagtttccgtcacgccggaatcaacgaccgtcgagcgtatc
gctcagagagtgattcacgtggaacgtcctcgtaagcgggcgcttctcttggatctcctg
gccgatcagggcatgacgcgcacgcttgtcttcacacgtaccaagcgcggtgcagatcgg
gtcgcgcgtcagctcgaggtcgcaaacatccctgcggctgccattcatggcaacaagagc
caaagccagcgtgagcgggcccttcacgcgttccgtaacgccaagatccgcgtgttggtc
gctaccgatatcgcagcgcgcggcatcgacatcgatcaagtctctcacgtcattaatttt
gaacttcccgaagtcccggaagcttatgttcaccgtatcgggcggactgcacgagctggc
acgtcgggtgtcgcgatttccttctgcgacggcgaagagcgcggcttgttacgcgacatc
gaacgcgttacccgccagaagatcccttcagaggaccgccgcggcgaccaagcattggcc
gttcgtttgccggaagtccgcgagcccgagcgtggtcccgccagaggcgccgccggtcgt
cagggacagccgcatcgtttttctcgcaacggtggcccgcggcggagggacggccacgca
gaaggtcgcgccgaccaactcaatggtgctcctgctcctcgcgcgcccggccacaagcga
gccgatgataacgcctcggcgcggcccgagcgggcccatcgcggttcgccgcatgcgcat
gctcatcaccgtggagagggtcagggcagtggcggcggacatcgcgccaaccagaaccgg
ccccgccggggtggtgggggtagaccctggacgtctgaaaagaacgtcgaacgcgcacag
taa
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