Candidatus Filomicrobium marinum W: BN1229_v1_3064
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Entry
BN1229_v1_3064 CDS
T03856
Symbol
uvrA
Name
(GenBank) ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
KO
K03701
excinuclease ABC subunit A
Organism
fil
Candidatus Filomicrobium marinum W
Pathway
fil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN1229_v1_3064 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fil03400
]
BN1229_v1_3064 (uvrA)
DNA repair and recombination proteins [BR:
fil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN1229_v1_3064 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BN1229_v1_3064 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
nSTAND1
AAA_25
DnaJ_CXXCXGXG
RsgA_GTPase
AAA_21
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
CFX43311
UniProt:
A0A0D6JHG3
LinkDB
All DBs
Position
1:2998846..3001917
Genome browser
AA seq
1023 aa
AA seq
DB search
MAKQRKTGGALTPQPMAGVIHVRGAREHNLKNVDLTIPRDSLVVFTGLSGSGKSSLAFDT
IYAEGQRRYVESLSAYARQFLQMMQKPDVDHIDGLSPAISIEQKTTSKNPRSTVGTVTEI
YDYLRLLFARVGVPHSPATGLPIESQTVSQMVDRVLALEAGTRLYLLAPIVRGRKGEYRK
ELAELQKKGFQRVKIDGTFYEIPDAPALDKKYKHDIDVVVDRVVVRPDMASRLADSFETA
LDLADGIAIAEFADKPLSAEKSGGAEGKAAGKDKDTGILRNKNETHERVVFSARFACPVS
GFTIDEIEPRLFSFNAPAGACPVCDGLGTELQFEPDLVVPDATLSLADGAVYPWAKTGAT
SPYYEQTLDALAKHYGVSMRTPWERLPKHVQLAILFGSGEEEIAFIYEDGVRRYKTEKPF
EGVIGNIERRWRETESDWVREELSRYQGAHPCEACGGYRLKPQALAVKIAGLHIGETVEM
SVKAADEWFSTLPEKLTKKQNEIAGRILKEITERLRFLNDVGLEYLTLSRNSGTLSGGES
QRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLVTLKHLRDLGNTVLVVEHDEDAIL
SADHVVDMGPGAGVHGGEIVAQGTPDEIKASKPSLTGQYLTGVRNVPVPSVRRQPQKGRT
LSVVGARSNNLQNVTAEIPLGLFVCITGVSGGGKSTLLIDTIYKAVARRLNGARDNPGEH
DRIVGLEHLDKVIDIDQSPIGRTPRSNPATYTGAFTPIREWYANLPEAKARGYAPGRFSF
NVKGGRCEACQGDGVIKIEMHFLPDVYVTCDQCNGKRYNRETLEVRFRDKSIADVLDMTV
EEGAEFFKAVPSIRDKLETLTRVGLGYIRVGQQATTLSGGEAQRVKLAKELSKRATGRTL
YILDEPTTGLHFHDVAKLLEVLHELVDAGNTVAVIEHNLEVIKTADWIIDLGPEGGDGGG
RIVVTGTPEVVAAEDASYTGRYLKDLLQRRGKTPAKPPDSDAKKPAPKRKTSSGRRTRRQ
AAE
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacaacgtaagaccgggggcgctctgacgcctcagcctatggctggcgtcatt
cacgtgcgtggcgcgcgtgagcacaacctgaagaacgtcgacctcacgatcccgcgcgac
tctctcgtcgtgtttacgggactatccggctcgggcaaatcgtctctcgcgttcgacacc
atctacgcggaaggccaacgccgttacgtcgaaagcctgtcagcctatgcgcgccagttt
ttgcagatgatgcagaaacccgacgtcgatcacattgatggtctgtctcccgccatctcg
attgagcaaaagacgacttcgaagaacccgcgctcgactgtcggcaccgtaaccgagatc
tacgactatctgcgtttgctgtttgcgcgggtgggtgtcccgcattctccggcgacgggc
ttacccattgagagccagacggtcagccagatggtggaccgggtgttggcgctagaggca
gggacccgtctttatctgctggcgccgatcgtgcgcgggcgaaaaggcgaataccgcaaa
gagctcgccgaacttcagaagaagggcttccagcgggtcaagatcgacgggactttctat
gagatcccggacgcgcccgctctcgacaagaaatacaaacacgacatcgacgtcgtcgtg
gatcgcgtggtcgtgcggcccgatatggcgtcgcggctcgcggacagttttgaaaccgcg
ctcgatcttgctgatggcatcgcgattgcggaatttgccgataaacctctctcagctgaa
aaatccggtggtgcggaaggcaaggccgcaggtaaggacaaggacaccggcatccttcgt
aataagaacgaaacgcacgaacgcgttgtcttctccgcacgctttgcttgtcccgtgtcc
ggtttcacgattgacgagatcgagccacgtttgttttcgttcaacgcgcctgcgggtgct
tgtcccgtgtgtgatggtctcggtacggaactgcaattcgagcctgacctcgttgtgcct
gacgcaacgctttctctggccgatggcgctgtctacccatgggccaagacaggcgcgacg
tcaccttattacgagcaaacgctggatgctctcgccaagcactacggggtgtcgatgcgc
acaccgtgggagcggctgcctaagcacgtacagctagccatcctcttcggctctggcgaa
gaggaaatcgcgttcatctacgaagacggggtccggcgctacaaaaccgagaaaccattt
gagggcgtcatcggcaatatcgagcggcgctggcgggagacggagtccgattgggttcgc
gaagagctgtcgcggtatcaaggcgcgcatccgtgcgaagcctgcggcgggtatcgtctc
aagccgcaagccctagcggtcaagatcgctggactgcacatcggtgagaccgtcgagatg
tccgtgaaggctgcggatgagtggttctcgacgctgcccgaaaagctgacaaagaagcaa
aacgaaatcgccggacgcattctcaaggagatcaccgagcggttgcgttttctcaatgac
gtcggtctcgaatatctcacgctgtctcgtaattccggaactctatcgggcggtgagagc
cagcgtatccggctcgcgagccaaattggttccggacttacgggcgtgctttatgtcctc
gacgaaccgtcgatcggcttgcatcaacgcgataacgaccggcttttggtgacgctgaaa
catctgcgcgatctgggcaatacggtgctcgtggttgagcatgacgaggatgccatcctc
agcgccgaccatgtcgttgatatgggtcccggagccggcgtgcatggcggcgagatcgtt
gcacaaggcacgccggatgaaatcaaggcttcaaaacccagcctaaccggccagtatctg
actggggtgcgtaacgtccccgtaccttcggtgaggcgtcagccgcaaaagggacggacg
ctttccgtcgtcggtgcgcgttccaacaatctgcagaacgtcacggcagaaattccgctc
ggcctgtttgtgtgtatcacgggcgtttcgggtggcggcaagtccaccctcctgatcgat
acgatttacaaggccgttgcccgacgcctcaacggcgcgcgagacaaccctggtgaacat
gaccgtatcgttggcctcgaacatctcgacaaggtgatcgacatcgatcagtcaccgatt
gggcggacaccaagatcgaacccggcgacgtatacgggcgcattcacacccatccgcgaa
tggtacgccaatttgccggaggccaaggcccgcgggtacgcgcctggccgcttttccttc
aacgtgaagggcggacgctgcgaagcgtgccagggcgacggcgttatcaaaatcgagatg
cacttccttcccgacgtctacgtcacgtgcgaccagtgcaacggcaagcgctataatcga
gaaacgcttgaagtgcgcttccgcgataaatcgattgccgacgttctcgacatgaccgtc
gaagagggtgccgagttcttcaaggcggtgccgtcaatccgcgacaagctcgagacgctg
acccgcgttggattgggctacatcagggtcggtcaacaggcgacgacactatccggcggc
gaagcccaacgcgttaaactcgccaaggaactttccaagcgtgccacgggtcgaacgctt
tatatcctcgacgagcctacaaccgggctgcatttccacgacgtcgccaagcttttggaa
gttctccatgaactcgttgacgccggcaacaccgtcgccgtcatcgagcacaatctggag
gtgatcaagactgcggactggatcatcgacctcggcccggaaggcggcgacgggggcggg
cgtatcgtcgtaaccgggactccggaagttgtagcggcggaagatgcgagttacacagga
agatatctgaaggatcttctgcagcggcgcggcaagacaccagccaaaccgccggatagc
gacgcaaaaaagcccgctccgaagcgcaagacttcttccgggagacggacaaggcggcag
gcagccgagtga
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integrated database retrieval system
