Candidatus Filomicrobium marinum W: BN1229_v1_3583
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Entry
BN1229_v1_3583 CDS
T03856
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
fil
Candidatus Filomicrobium marinum W
Brite
KEGG Orthology (KO) [BR:
fil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fil03019
]
BN1229_v1_3583 (hrpB)
Enzymes [BR:
fil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BN1229_v1_3583 (hrpB)
Messenger RNA biogenesis [BR:
fil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BN1229_v1_3583 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
HA2_C
ResIII
AAA_30
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CFX54385
UniProt:
A0A0D6JKB5
LinkDB
All DBs
Position
1:3508891..3511416
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AA seq
841 aa
AA seq
DB search
MSRPTGGKSAKGTGSNPNPFAEPLPVDEVLEQLSDTLSQGTSAVLVAPPGAGKTTRVPLA
LLDAPWLDGRKIIVLEPRRIAARGAAERMARSLGEELGETVGLRARLNSRVGRKTRVEVV
TEGVFTRMILDDPMLEGIGAVLFDEFHERSLDADLGLALTLDVRRGLRQDLRILVMSATL
AADRVAGLLDGAPVIVSEGRSYPVETRYLGRSVERRIEDQVKDAIMRAVRSEPGSVLAFL
PGQREIIRVAEALEETMKGDVILAPLYGAMDPRDQDQAIAPAPVGKRKVVLATAIAETSL
TIEGIRVVVDSGLARVPQFEPDVGVTRLVTVRAPLSSVDQRRGRAGRMEPGVCYRLWDEA
QTSSLSRFPEPEIRTADLTGLLLDCADWGVVDPTSLSWLDAPPSAALDAARSQLVALGAL
DLEGRLTDVGRALRALPLPPRLARMVFAAVEDGCEDEAAEIAAVIVERGIGGNDTDLAVR
LAKFRRDSSRRVKDMRRLAGEWARVARSLVSLRKPISLRDIGLAGHLARAYPDRIAKSRG
SDGQYLLVNGRGARLDTADALARSPYLVVADLQGSAAATRILLAVQASEDDIVAIAGARM
TSSVELAFDTPSSSVRGREVQKLGAITLSAKPMQVRASEETQELLAEGLAKIGIAALPWS
KAQIQLRARVAFLRAESPTDWPDLGDAALAETVQLWLAPFLAGKLRASDLNAGDLSAGLD
MLLSWEQRRDLDEEAPTHFLAPTGNRHAIDYETAGAPALHIRVQELFGLTEHPAIAKGRL
PLTLHLLSPAHRPIQITRDLPGFWAGSWAAVRADMKGRYPKHVWPDDPARAEATHRAKPR
R
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
ttgagccgacctaccggtggcaaaagcgcgaaggggaccggttccaatcccaatccgttt
gctgagccgctccccgtcgacgaggtgttggaacagctgtcggataccctgtctcagggg
accagcgccgttctggtggctccgccgggtgcaggtaaaacgacgcgtgtgcctttggcg
ctgcttgacgctccgtggctggatggccgcaaaatcatcgttctggagcctcgacgcatt
gctgctcgcggtgctgcggagcggatggccaggagcctgggagaggaactcggtgagacc
gtaggactccgggcgcgcctcaactcgcgggtggggcgtaagacccgggtcgaggttgtc
acggaaggcgtgttcacacgcatgatcctcgatgatccgatgctcgaaggcattggggct
gttcttttcgatgagtttcacgagcgatcattggatgccgatctgggattggcgctcacg
ctggatgtgcgacggggactgcgacaggacctgcgtattttggtcatgtcggcgacgctg
gcggctgatcgcgtcgcgggcttattggatggtgcgccggtcattgtcagtgaggggcgg
agctatccggtagaaacacgctatctcgggcgcagtgttgagcggcgtattgaggaccag
gtcaaagacgcgattatgcgggcagtccgttcggagcctggatccgtgcttgcgtttcta
ccaggccaacgggaaatcatacgcgtcgcggaagctctagaagagacgatgaagggggat
gtcatccttgcccccctttatggcgctatggatccacgcgaccaggaccaagctattgcg
ccagcaccggtgggtaaacgaaaggtcgtgcttgcgaccgcgatcgctgaaacttctctc
acaatcgaaggcattcgcgttgtggtcgacagcggcttggcgcgggtgccgcagtttgag
cctgatgttggggtgacgcggcttgttacggttcgcgcgccgctttcgtccgtggaccag
agacgtggccgggcggggcgtatggagcccggcgtctgctatcgtttgtgggatgaagca
cagacttcatcgctttctcggtttcccgagcctgaaattcgaacggcagatctcacgggg
cttctgctcgattgtgccgattggggcgtcgtggatccgacttctctctcttggctcgat
gcacctccttcggctgcgcttgatgcagcacgcagccagttggtcgcgcttggtgcgctt
gatcttgaaggccgcctcacggacgtggggcgtgctctgcgcgcactcccattacctccg
cgattggcgcgcatggtatttgctgccgtagaggatggctgtgaagatgaggctgccgaa
attgcggcggtgatcgtcgagcgggggatcggcggcaacgacaccgatctggcggtcagg
cttgctaagtttcgtagagattcctcacgccgggtaaaggacatgcgccgtttagcaggg
gagtgggcgcgtgtggcgcgcagtctcgtctcactgcggaagccaatctctctacgcgac
atcggtttggctggtcatctggcgcgcgcttatcctgatcgcatcgcgaaatcacgtggt
tcggatggccagtacttattggtcaacggccgcggtgcgcgtctcgatacggctgatgct
ttggcgcgttctccttatctcgttgtcgctgatttgcagggtagtgccgccgccacccgt
attttgttggcagtgcaggcgagcgaggatgacatcgtcgcgattgctggcgcgcgtatg
acatcgtcggtggaactcgctttcgatacaccgtcatcgagtgtgcgcggacgggaggtg
caaaagcttggggcaattactttgtccgctaagccgatgcaggtccgggcgagcgaagag
acgcaagagctgcttgcggaggggctggcaaagatcgggatcgcggcacttccttggagc
aaggcgcaaattcaactcagggctcgtgttgcctttttgagagcggagtcgccgactgat
tggccggacttgggcgatgcagcgctcgctgaaacggttcagctttggctggcgccgttt
ctggctggaaagctgcgggcaagtgacctcaacgcgggggatctttcggcgggtttggat
atgctgctgtcgtgggaacaacggcgagacctcgatgaggaagcgccgacgcatttcctt
gccccgaccggcaatcgacacgctatcgactatgaaacggcgggggcaccggcactgcat
atccgggtgcaggaattgtttgggctgacggaacatcccgcgatcgccaaagggcgtctc
cctctgacgctgcaccttctttcgcctgcccaccgtcctatccagatcacgcgcgatctg
cccggattctgggcggggtcctgggcggccgtccgcgcggacatgaaggggaggtatccc
aagcacgtctggccggatgatccagcgcgcgcagaagcgacccaccgtgcaaagccgcgg
cgctga
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