Flavobacterium indicum: KQS_00005
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Entry
KQS_00005 CDS
T01781
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fin
Flavobacterium indicum
Pathway
fin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQS_00005 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fin03019
]
KQS_00005 (rnr)
03016 Transfer RNA biogenesis [BR:
fin03016
]
KQS_00005 (rnr)
Enzymes [BR:
fin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KQS_00005 (rnr)
Messenger RNA biogenesis [BR:
fin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KQS_00005 (rnr)
Transfer RNA biogenesis [BR:
fin03016
]
Prokaryotic type
tRNA degradation factors
KQS_00005 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
RNR_OB1_NT
WSLR
T4P_PilY1
Motif
Other DBs
NCBI-ProteinID:
CCG52017
UniProt:
H8XNA0
LinkDB
All DBs
Position
88..2265
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AA seq
725 aa
AA seq
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MKKNFRKMTKKNKDFSAKIYKILSQEPSKSFNYKQIAAILEVTDTQSRNEIIKELKYLAS
QEKIQEIDRGKFQVISSSDYYEGYIDMTSRKTGYFVCDELEKDVLIPFANLNHALDGDKV
KCYIYNKRASRRPEAEVVEILERAKNEFVGVIDVQKNFAFVTTANAKMYTDIFIPKNDIG
EAQHGEVVLVRMTDWPKKADSPFGKVVKVLGKPGEHNTEIHAILAEYGLPYDFPIEVEAF
ANKIDTSITVEEIAKRRDLRNVLTFTIDPKDAKDFDDALSFQVLENGNYEIGVHIADVSH
YVKEGTILDDEAYHRATSVYLVDRVVPMLPEVLSNFACSLRPHEEKYTFSAVFQLNEKAE
VLDSWFGRTVIYSDQRFAYEEAQEIIETKSDIIPAHISLTGEQYHAPKPIVEATLKLDEL
AKKLRSKRMAAGAISFDKVEVKFNLNENAEPVGVFFKQSKDANHLIEEFMLLANRKVAEF
IGKQKKTFVYRIHDEPNEDKLMSLQSVISKFGYSINFKSKATISSSLNTLLEDVQGKKEQ
NMVDTLAIRCMSKAAYSTQNIGHYGLAFDYYSHFTSPIRRYPDVMAHRLLQYYLDGGKSV
SEEDYEEKCKHSSEMESLAANAERDSVKYMQVKYMQDHKDQEFLGVVSGVTEWGIYVEII
ENKCEGMCRIREIKDDYYVFDEKQYALVGEMTKSLIQLGDEVYVKVKNADLVKKQLDFWY
IRKNE
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaattttagaaaaatgacaaaaaaaaacaaagacttctcagcaaagatttat
aaaatactttcacaagaaccttctaagagttttaattacaaacaaattgctgcaatttta
gaagttacagatactcaaagtagaaacgaaattattaaagagttaaaatatttagcctct
caagaaaagatacaagaaattgatcgaggtaaatttcaagtaatttcaagttctgattat
tacgaaggatatattgatatgacctctcgtaaaacaggctattttgtgtgtgatgaatta
gaaaaagatgttttaataccgtttgctaatttaaatcatgcgttagacggcgataaagta
aaatgttacatttataataaaagagcctctagaagacccgaagctgaagttgttgaaatt
cttgaacgagctaagaatgaatttgttggcgtgatagatgttcaaaagaattttgccttt
gttaccacagctaatgcgaaaatgtataccgatatttttattccaaaaaatgatattggt
gaagcccaacatggtgaagtcgttttggttcgtatgacggattggcctaaaaaagcagat
tctccttttggaaaagtagtaaaagtgttaggtaaaccaggggaacacaacactgaaatt
catgctattttagcagaatatggcttgccttatgattttccaattgaagtagaagctttt
gcaaataaaattgatacttctattaccgttgaagaaattgcgaaacgaagagacctacgt
aatgttttaacatttactatagatcctaaagatgccaaagattttgatgatgccttatct
tttcaggttttagaaaatggtaattatgaaattggagtgcatattgccgatgtttcacat
tatgttaaagaaggcactattttagatgacgaagcttatcatagagctacttcggtgtat
ttagtagaccgtgtggttcccatgttaccagaagtgttgtcaaattttgcttgttccttg
cgtccacatgaagaaaaatataccttttctgccgtatttcaattgaatgaaaaagcagaa
gtacttgattcttggtttggaagaaccgtaatttattcggatcagcgttttgcttatgaa
gaagctcaggaaataatagaaacaaaaagtgatatcattcctgcacacatttcgttaact
ggagaacagtatcatgctccaaaaccaatagttgaagctacattaaagctagatgaatta
gctaaaaaattacgtagtaaacgaatggcagctggtgctatttcttttgataaagtagaa
gtaaaattcaatttaaatgaaaatgcagaacctgttggtgtattttttaaacaaagtaaa
gatgcgaatcatttaattgaagaattcatgttattagccaatagaaaagtagcagaattt
attggtaaacaaaagaaaacttttgtctatcgaattcacgatgaacctaatgaagataaa
ttaatgagtttgcaatcggtgatttcaaaatttggttattccataaattttaaatcgaaa
gcaaccatttctagttcattaaataccttgttagaagatgttcaagggaagaaagaacaa
aatatggtagatactttagctataagatgtatgagtaaagcggcctattctactcaaaat
atcggacattacggattagcatttgattattacagtcattttacgtctcctattcgtcgt
tatcctgatgttatggcacaccgtttgttacaatattatttagatggaggcaaaagtgtg
agtgaagaggattatgaagaaaaatgtaaacattcgtctgaaatggaaagtttagctgct
aatgccgaacgcgattctgtgaaatacatgcaagtaaaatacatgcaagatcataaagat
caggagtttttaggtgttgtttcaggagtaacagaatggggtatatatgtagaaatcatt
gaaaataaatgcgagggaatgtgtcgaattcgagaaataaaagatgattattatgtattt
gatgaaaaacaatatgccttagttggagaaatgactaaaagtttaatacaattaggggat
gaagtgtatgttaaagttaaaaacgccgatttagttaagaaacaattagacttttggtat
attagaaagaatgaataa
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