Flavobacterium indicum: KQS_07365
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Entry
KQS_07365 CDS
T01781
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fin
Flavobacterium indicum
Pathway
fin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQS_07365 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fin03021
]
KQS_07365 (rho)
03019 Messenger RNA biogenesis [BR:
fin03019
]
KQS_07365 (rho)
Transcription machinery [BR:
fin03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KQS_07365 (rho)
Messenger RNA biogenesis [BR:
fin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KQS_07365 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
AAA
Motif
Other DBs
NCBI-ProteinID:
CCG53431
UniProt:
H8XQY3
LinkDB
All DBs
Position
complement(1608556..1610250)
Genome browser
AA seq
564 aa
AA seq
DB search
MFDQSTLKEMKLSDLQEIAKVANIKKFKTLKKEELITQILDVQETSQADKTTEKKKPALK
STTDKKAKSNVNPVVAENVVEEPTPVQEKKKASEPRKRIKKSSEISYPDFQEEITFDDEQ
IKSTKVENKAVVKPISEELPTTPNSSDSESKTEDLDNVEKQNPNFKKNKFNKNPHNNQNS
NNNQKNYRDNDFEFDGIIETEGVLEMMPDGYGFLRSSDYNYLASPDDIYLSQSQIRLFGL
KTGDTVKGVVRPPKEGEKFFPLVKVLKINGYDPQVVRDRIAFEHLTPLFPEQKLNLADRS
KSISTRIIDLFAPIGKGQRAMIVAQPKTGKTMLLKDIANSIAANHPEVYMIVLLIDERPE
EVTDMQRSVRAEVIASTFDEPAERHVKVANIVLEKAKRLVECGHDVVILLDSITRLARAY
NTVQPASGKVLSGGVDANALQKPKRFFGAARNIENGGSLSIIATALTETGSKMDEVIFEE
FKGTGNMELQLDRKIANKRIFPAIDLVSSSTRRDDLLLDEKTIQRMWILRKYLADMNPVE
AMEFIESRIKGTRNNEEFLISMND
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatcaatcgacgttaaaagagatgaaactctctgatttgcaagaaatagcaaaa
gttgcaaatattaaaaagtttaaaaccttaaaaaaagaagagcttattacacaaatttta
gatgtacaagaaacttctcaagcagataaaactactgaaaaaaagaaacccgctctcaaa
tcaactactgataaaaaagctaaatctaatgtaaatcctgttgttgctgaaaatgtagta
gaagagccaacacctgttcaggaaaaaaagaaagcatcagaacctagaaaacgtattaag
aaatcatcagaaatcagttatcccgattttcaggaagaaataacatttgatgatgaacaa
ataaaatctacgaaagtagagaataaagcggttgtaaaaccaatttcggaagaattgcca
actactccaaattcttcagattcagaaagtaagacagaggatttagataatgttgaaaaa
caaaatccaaactttaaaaaaaataaattcaacaaaaatccccacaacaatcagaattcc
aacaacaatcagaagaattatagagataatgattttgaatttgatggtattattgaaaca
gaaggtgttttagaaatgatgccagatggctacggtttccttcgttcttctgattataat
tatttggcttcaccggatgatatttacttatcacaatcacaaattagactttttggttta
aaaactggagataccgtaaaaggggtagttcgtccaccaaaagaaggagaaaagtttttt
cccttggtaaaagtgcttaaaatcaatggatatgatccacaagttgtacgtgatagaatc
gcatttgaacatttaacacctttatttcctgagcaaaaattaaacttagctgatagaagt
aagtcaatttcaactagaattattgatttatttgcacctattggtaaaggccaacgcgct
atgattgttgcgcaacctaaaacaggtaaaaccatgttgttaaaggatattgccaattca
attgcagcaaatcaccctgaagtttatatgattgttttgttaatcgatgagcgaccagag
gaggttacagatatgcaacgttcggtacgagctgaagttattgcttctacctttgatgaa
ccagcagaacgacatgttaaagtagccaatattgttttggaaaaagcaaaacgtttggtt
gaatgtggtcatgatgtagttattttattagattcaataactcgtttggcgagagcttac
aatacggttcagcctgcgtcaggaaaagttttgagtggtggagtagatgccaatgcctta
caaaaaccaaagcgtttctttggagcagctcgtaatattgaaaatggaggttcgttaagt
ataatagcaactgctttaactgaaacaggatctaaaatggatgaagttatctttgaagag
tttaaaggtactggtaacatggaattacaattagatagaaaaattgccaataaacgtata
ttcccagctattgatttagtttcttcaagtacaagacgtgatgatttattattagatgag
aaaaccattcaacgcatgtggattttacgtaaatacctagcagatatgaatcccgttgaa
gctatggaatttattgaatcgagaataaaaggaacaagaaataatgaagagtttttgatt
tcaatgaatgattaa
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