Flavobacterium indicum: KQS_08635
Help
Entry
KQS_08635 CDS
T01781
Name
(GenBank) Probable ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fin
Flavobacterium indicum
Pathway
fin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQS_08635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fin03019
]
KQS_08635
Enzymes [BR:
fin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KQS_08635
Messenger RNA biogenesis [BR:
fin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KQS_08635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
Flavi_DEAD
Cas3-like_C_2
AAA_22
MMR_HSR1_Xtn
Motif
Other DBs
NCBI-ProteinID:
CCG53663
UniProt:
H8XTT3
LinkDB
All DBs
Position
complement(1841662..1842957)
Genome browser
AA seq
431 aa
AA seq
DB search
MTFEDLKLHRNITEVLKEENYVAPTPIQQQAIPIILEEHDLVGCAQTGTGKTAAFAIPIL
NYLHPIVGSKNKRKVIRTLVLAPTRELAHQILDSFDTYGRYMNTKAMVIYGGVNQVPQVN
KIKEGVDILIATPGRLLDLHKQGFIDLNHLHHLVIDEADQMLDMGFINDVKKIIKLTPDN
RQTLLFSATMPAAIRELADQFLKKPKFVSVTPVSSTAEKVNQKVYMVQKEDKRKLLIHLL
QEEKISNVLVFVRTKHSADNVVKALKKNEITAEAIHGDKSQTARLRVLDEFKNKKISVLV
ATDIAARGIDIDLLPYVINFDIPNVPETYVHRIGRTGRAGNEGLAISFCGKDEVTYWKDI
EKLTRQQIKVVKDNPFPFREYTEEEKTAKQNDRRNPKKQNTGQKPAGTSNAKKASNSKKS
DASKKNKKRWY
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgaagatttaaaattacatcgcaatattacagaagtattaaaagaagaaaac
tatgtagcgcctacacccattcaacaacaagcaattcctatcatattagaagaacatgac
ttggtgggttgtgcacaaactggtacaggtaaaaccgctgcatttgcgattcctatttta
aattatttgcatccaattgttggatcaaagaataaacgaaaagtcattagaaccttggtt
cttgcaccaacgcgtgaattggctcatcaaattttagatagctttgacacttatggtcgt
tacatgaatacaaaagctatggtgatatatggtggtgtcaatcaggtaccccaagtaaat
aaaataaaagaaggagtagatattttgattgctacaccaggacgattattggatttacac
aaacaaggatttattgatttaaatcatttgcatcatttggtaatcgacgaagcagatcaa
atgttagacatgggttttataaatgatgtaaagaaaataattaaacttactccagataac
cgtcagacactattgttttctgcaaccatgcctgctgctattcgggaattagccgatcag
tttttgaaaaaaccaaaatttgtttcagttactccagtttcaagtacggctgaaaaagtg
aaccagaaagtttatatggttcaaaaagaagataaacgaaaactgttgattcatttactt
caagaggaaaaaatatcgaatgtgttggtttttgttcgaactaaacacagtgcagataat
gtggttaaagcattaaaaaagaatgaaattacagctgaagcgatacatggggataaatcg
cagacggctcgtttacgtgtgttggatgaatttaaaaataaaaaaatatcggttttagtt
gccacagatattgctgctcgagggatcgatattgatttgttaccctacgtgattaatttt
gatattcccaatgtgcctgaaacgtacgttcaccgtattggaagaacaggtagagcagga
aacgaaggattggccatttctttttgtggaaaagatgaagttacttattggaaggacatc
gaaaaattaacgcgtcaacaaattaaagtagttaaagacaatccctttccatttagagaa
tatacagaagaagaaaaaacagccaagcaaaacgatagaagaaatcccaaaaaacaaaat
actggacaaaaaccagcaggaacaagcaatgctaaaaaagcttctaattccaaaaagtcc
gatgcgtctaagaaaaacaaaaaacgttggtattaa
DBGET
integrated database retrieval system
