Flavobacterium indicum: KQS_09960
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Entry
KQS_09960 CDS
T01781
Symbol
rhlE
Name
(GenBank) Putative ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fin
Flavobacterium indicum
Pathway
fin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQS_09960 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fin03019
]
KQS_09960 (rhlE)
Enzymes [BR:
fin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KQS_09960 (rhlE)
Messenger RNA biogenesis [BR:
fin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KQS_09960 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
CMS1
Thoc2
Motif
Other DBs
NCBI-ProteinID:
CCG53921
UniProt:
H8XUZ3
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All DBs
Position
2125691..2127034
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AA seq
447 aa
AA seq
DB search
MVTFQDLNLPASLQKAIDELGFTNPTPIQSKAFPYVMSGRDVMGIAQTGTGKTFAYLLPI
LKQWKFQKTDTPRVLILVPTRELVVQVKEELDKLTKYMSVRSLAVYGGVNINTQKTAVYE
GLDIVVGTPGRVMDLALDNVLRFDNIQKLVIDEFDEILNLGFRVQLVSILSMMKSKRQNI
MFSATMTEEVDDVLDEFFEFPEEVSLAPSGTPLEKIEQRLYKTPNFLTKLNIVKHFLADE
AYSRILLFVNSKRLADFVLEHLEEDFPDQFGAIHSNKTQNYRLNTMELFQNGTLRGLVTT
DIMARGLDISDITHVINLQLPETPEQYIHRIGRTGRADKEGIAITMVSPKEEEEFMEIEL
LMNKEVEVFDIPEEVTIEEKRLEFEKEFKKPKVTSKKKAIEKGAAFHDKSEKNSKVNLGG
PGKRKPRKTAPRNRAVERKRAEKKKKR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggtaacctttcaagatttaaacttaccggcatctttacaaaaagcaattgacgaatta
ggctttacaaaccctacacctattcaatccaaagcattcccttatgtaatgtcggggcgc
gatgtgatgggtattgctcaaactggtacaggtaaaacctttgcatatttgttaccaata
ttaaaacagtggaaatttcaaaaaaccgatacacctagagtacttatcttggttcctact
cgcgaattagtcgtacaagttaaagaagaattagacaaattgaccaaatacatgagtgtt
cgttccctagctgtttatggtggtgtaaacatcaatacgcaaaaaactgcggtttatgaa
ggtttagatattgttgttggaacacctggacgtgttatggatttagcacttgacaatgtc
ttacgatttgacaacattcaaaaacttgttatcgacgaatttgatgagattttaaattta
ggtttccgtgtacaattggtttccattctttcaatgatgaaatcaaaaagacaaaacatt
atgttttcggctaccatgactgaagaggttgatgatgttttagatgaattttttgaattt
ccagaagaagtttcattggctccaagcggcacacctttagaaaaaattgaacaacgatta
tataaaactcctaatttcttaactaaattaaatatagtcaaacatttcttagcagatgaa
gcctatagccgtattttattgtttgttaacagtaaacgtttagctgattttgttttagaa
cacttagaggaagatttccctgatcaatttggtgctattcactccaataaaacacaaaat
tatcgtttaaataccatggaattattccaaaatggtacattacgaggtttggtaaccact
gacattatggctcgtggtttagacatttcagatattacacatgttatcaacttacaatta
cctgaaacacctgagcaatacatccacagaattggtagaactggacgagcagacaaagaa
ggtattgctatcactatggtgagtccaaaagaagaagaagaatttatggaaattgaactt
cttatgaataaagaagtcgaagtttttgatattccagaagaagttacaatcgaagaaaaa
agattggaatttgaaaaagaatttaaaaaaccaaaagttacttccaaaaagaaagcgatt
gaaaaaggtgctgctttccatgataaatcagaaaaaaacagcaaagttaatttaggagga
ccaggcaaaagaaaaccgcgtaaaacagcacctagaaatagagccgttgaacgaaaaaga
gccgaaaagaaaaagaaacgataa
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