Flavobacterium indicum: KQS_10735
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Entry
KQS_10735 CDS
T01781
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit RpoC
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fin
Flavobacterium indicum
Pathway
fin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KQS_10735 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fin03021
]
KQS_10735 (rpoC)
03400 DNA repair and recombination proteins [BR:
fin03400
]
KQS_10735 (rpoC)
Enzymes [BR:
fin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KQS_10735 (rpoC)
Transcription machinery [BR:
fin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KQS_10735 (rpoC)
DNA repair and recombination proteins [BR:
fin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KQS_10735 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
CCG54073
UniProt:
H8XVV9
LinkDB
All DBs
Position
complement(2281474..2285772)
Genome browser
AA seq
1432 aa
AA seq
DB search
MTKLKDKNTVKRFNRITIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKGPDGESLNALDFLTEEEYLNIADSLPMENQY
LDDNDPNKFIAKMGAECIMDLLARTDLDDLSYKLRHAANNETSKQRKTEALKRLNVVESF
REANKNRENLPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQEAVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPEMKMYECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLTCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERLSTPEY
PIKGEGLTFYSVEEVHIALNEGRLDLNARVKVRTKDFNEEGELVYKVIQTTAGRVLFNEV
VPEAAGYINEVLTKKSLRDIIGKILAVTDVPTTAAFLDNIKDMGYKFAFKGGLSFSLGDI
KVPDEKEPLIASAREEVDAITMNYNMGLITNNERYNQVIDVWTSANAKLTEYAMKNIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAAGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIINSVDCGTLRGIEVTALKKNE
EIVESLGERILGRVALQDVVNPLDSEILVHAGEEITEAIVKKIEGSPVEKVEVRSALTCE
ATKGICAKCYGRNLATGKMAQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGISEDSS
IVARFGGRLEIEDLKTVKGEDAEGNTIDIVISRSTELKLVDAKTGIVLNTHNIPYGSTIY
VNDGDVVEKGATICKWDPYNGVIVSEFTGKVGYEDIEQGQSFLVEIDEQTGFQEKVISEA
RNKKLIPTLHIYGKDGELIRSYNLPVGAHLMVDDGEKIKAGKVLVKIPRRSSKAGDITGG
LPRITELLEARNPSNPAVVSEIDGVVTFGKVKRGNRELSIESKFGEVKKYLVKLSNQILV
QENDFVRAGMPLSDGAITPDDILRIQGPSAVQQYLVNEIQEVYRLQGVKINDKHFEVVIR
QMMRKVQIQDPGDTLFLEDQLVHTSDFIVENDKLYGMKVIEDAGDSTNLKPGQIVSPREL
RDENSLLKREDKNLVVARDVVPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKIDTLEGLKENVIVGHRIPAGTGMRDYDNILVGSKDEYSELMAAKEEFNY
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaattaaaagataaaaataccgttaaaagatttaacagaatcacaataggtttg
gcttctccagaatcaatcttggcagaatcaagaggtgaagttttaaagcctgaaacaatc
aactatcgtacgcataaaccagagcgtgatggtcttttctgtgaaagaatttttggtcca
gttaaagattacgaatgtgcttgtggtaaatataaaagaattcgctacaaaggaatcgta
tgtgaccgttgtggtgtagaagttacagagaaaaaagttagaagagatagagtaggtcac
attaatttagtggtgcctattgctcatatttggtacttccgttcattacctaacaaaatc
ggttacttattaggcttgccttctaagaaattagatatgattatctactatgaaagatat
gtagttattcaaccaggtattgctaaagggccagatggagaatctttaaatgcattagat
ttcttaactgaagaagaatatttaaatattgctgattcattaccaatggaaaatcaatat
ttagatgataacgatcctaataaattcatcgctaaaatgggtgctgaatgtattatggat
ttactagctcgtaccgatttagatgacttgtcatataaattacgtcacgctgctaataat
gagacttctaagcaaagaaaaacggaagctttaaagcgtttaaatgttgttgaatcattc
cgtgaggctaacaaaaacagagaaaatctacctgaatggatgattttaaaagtaatcccg
gttattccacctgaattacgtccgttagtgccacttgatggaggtcgttttgcaacttca
gatttaaatgacttatatagaagagttattatacgtaataaccgtctaaaacgtttaatg
gaaattaaagctcctgaagtaatcttacgtaatgaaaaacgtatgttacaagaagcagtt
gattcattattcgataatacaagaaaagcttctgcagttaaaacagaatcaaatagacca
ttaaaatctttatcagattcattaaaaggtaaacaaggacgtttccgtcaaaacttatta
ggtaaacgtgtggattattctgctcgttcggtaattgttgttggaccagaaatgaaaatg
tatgagtgtggtcttccaaaagatatggctgcagaattgtacaaaccattcgttattcgt
aaattaatcgaaagaggaattgttaaaacagttaagtcggctaagaaaattatcgataaa
aaagagccagtagtatgggatatcttagaaaatgtaatcaaaggacatccagtattacta
aaccgtgctcctacacttcacagattaggtattcaagcattccaacctaaattaattgaa
ggaaaagcaatccagttacacccattgacatgtacggctttcaacgccgatttcgatggt
gaccagatggcggttcacttacctttaggacctgaagcaatcttagaagctcaattgtta
atgttagcttctcacaatatcttaaaccctgcaaatggtgctcctattacagtaccttct
caggacatggtattgggtctatattacatgactaaagaaagattgtctacacctgaatat
cctattaaaggtgaaggtttaacattctattcagttgaagaagttcacattgctttaaat
gaaggacgtttagacttaaatgctcgtgttaaagtaagaacaaaagacttcaacgaagaa
ggagaattagtttataaagttattcaaacaactgcaggtagagtattatttaatgaagta
gtacctgaagcagctggatatattaacgaggttttaactaaaaaatctttaagagatatt
attggtaaaatcttggctgtaactgatgttcctacaacggctgctttccttgataatatt
aaggatatggggtataaatttgctttcaaaggtggtttatcattcagcttaggtgatatt
aaagttccagatgaaaaagagcctttaattgctagtgcaagagaagaagtagatgcaatt
acaatgaactataacatgggtcttattacaaataatgagcgttataatcaggtaattgac
gtttggacttctgctaatgcaaaattaacagagtatgccatgaaaaacattagagaagac
caacaaggattcaactctgtgtatatgatgcttgactctggagcaaggggttcaaaagaa
cagatccgtcagttaacaggtatgcgtggattgatggctaagcctaaaaaatctactgct
gctggaggtgaaattattgaaaatccgattttatcaaactttaaagaaggtttatcaatc
ttagaatacttcatctcaacacacggtgctcgtaaaggtcttgccgatacggccttgaaa
actgccgatgctggatatttaacgagaagattacatgacgtatctcaagatgttatcatt
aattcagtagattgtggtacattgagaggaattgaagtaactgcattgaagaaaaacgaa
gaaatcgttgagtctttaggagaaagaattttaggtcgtgtggctttacaagatgttgtt
aatcctttagattctgaaattttagttcatgcaggtgaagaaattacagaagcaattgtt
aagaaaattgaaggttctccagttgaaaaagtggaagttcgttcggcattaacatgtgaa
gctacaaaaggtatttgtgctaaatgttatggtagaaacttagcaactggtaaaatggct
caaaaaggtgaagctgttggagttattgctgcacagtcaattggtgagccaggtacacag
ttaacacttcgtacgttccacgttggaggggttgctggaggtatctcagaagattctagt
attgttgctcgttttggaggtagattagaaattgaagatttaaaaacagttaaaggtgaa
gatgcagaaggaaatacaattgatattgttatttctcgttcaacagaattaaaattagtt
gatgctaaaactggaattgttttaaatacgcataatataccttacggttcaactatttat
gtaaatgatggtgatgtggttgaaaaaggagctacaatctgtaaatgggatccttataat
ggtgtaattgtatctgaatttacaggtaaagtaggttacgaagatatcgaacaaggacaa
tcgttcttagtagaaattgacgaacaaactggtttccaagaaaaagtaatttctgaagca
cgtaataaaaaattaattccaaccttacatatttatggtaaagatggtgaattaattaga
tcgtataacttaccagtaggtgcccacttaatggttgatgacggtgaaaaaattaaagca
ggtaaagttttagttaaaattccacgtcgttcttctaaagcaggtgatattacaggaggt
ttaccaagaattacagagttgttagaagcgcgtaatccttctaatccagctgtagtttct
gagattgatggtgtagttacttttggtaaagtgaagagaggtaatagagagttatctatt
gagtctaaatttggtgaagtgaagaaatatttagttaaactttctaaccaaatcttagtt
caagaaaatgactttgttagagctggaatgccattatcagacggagcaatcactccagat
gatatcttaagaattcaaggtccttctgctgtacaacaatacttagtaaacgaaattcaa
gaagtatatcgtttacaaggggtaaaaatcaacgacaaacactttgaagttgtgattcgt
caaatgatgagaaaagtacaaatccaagatccaggagatactttattcttagaagatcaa
ttagttcatacaagtgactttattgttgaaaacgataaattatatggaatgaaagtaatt
gaagatgctggcgattctactaatttaaaacctggtcaaatagtttctcctagagaatta
agagatgaaaactcattgttaaaacgtgaagataaaaatttagtagttgcaagagatgtt
gttcctgcaacggctactccaattcttcaaggtattacaagagcttcattacaaactaag
tcgtttatatctgcggcttcgttccaggaaactactaaagtgttaaatgaagcagcagtt
gctggtaaaattgatactctagaaggattgaaagaaaacgttattgttggtcacagaatc
cctgcaggtacaggtatgagagattatgataacattcttgtaggttcaaaagatgaatac
agcgaattaatggctgcaaaagaagagttcaattactaa
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