Flavobacterium indicum: KQS_11450
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Entry
KQS_11450 CDS
T01781
Symbol
rtcB
Name
(GenBank) Protein of unknown function RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fin
Flavobacterium indicum
Brite
KEGG Orthology (KO) [BR:
fin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fin03016
]
KQS_11450 (rtcB)
Enzymes [BR:
fin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KQS_11450 (rtcB)
Transfer RNA biogenesis [BR:
fin03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KQS_11450 (rtcB)
Prokaryotic type
tRNA splicing ligases
KQS_11450 (rtcB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CCG54207
UniProt:
H8XPZ1
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All DBs
Position
2446139..2447560
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AA seq
473 aa
AA seq
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MNTPINGNDLKELGYPEGTLVGLALRINKKRNGYNREEMFMHYKAVLEHPENYIDDKVFS
KLAIAIIEKANEKPEDFIQLNKNPNAFSAYGLENIEEGARKQMEVAMQLPVTIAGALMPD
AHQGYGLPIGGVLATNNAVIPYGVGVDIGCRMALSVYDIPEFFYYENEDKFKRELIAHSK
FGAGHGFHGQYKSDHAVLESNVFNENTFVKKLKDKAWSQLGSSGGGNHFVEFGIMEFEKD
DEILNIPKGKYVALLTHSGSRGLGATIAGHYTKLAKDTCKLPEVAKNLAYLDLNSQLGQE
YWLAMNLSGDYASACHEVIHTKMEKALGATVLAKVENHHNFAWKEMYNNEEVIVHRKGAT
PAAKGLMGIIPGSMTAPGFLVRGKGEENAINSASHGAGRQMSRTKAIKSITKTDMQTILK
DHGVTLIGAGLDEAPMAYKDIHQVMAAQQELVDVVAKFTPKMVRMADDGSHED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaacacacccataaacggaaacgacttaaaagaactaggctatcctgaaggaacttta
gtaggcttagcgttacgaattaacaaaaaaagaaacggatataacagagaagaaatgttt
atgcattacaaagctgttttagaacatccagaaaactatattgacgataaagtatttagc
aaactagctattgccattattgaaaaagccaatgaaaaaccagaagatttcattcaattg
aacaaaaatccaaatgcattttcagcttacggattagaaaatattgaagaaggtgctaga
aagcaaatggaagtcgcgatgcaattaccggtgacaattgctggcgccttgatgccagac
gcacatcaaggttatggtttgccaattggtggagttttagccacaaacaatgcggttatt
ccatatggagtgggtgttgatattggttgcagaatggcattatcggtttatgatattccg
gaattcttttattatgaaaacgaagataaatttaaaagagaattgattgcgcactcaaaa
tttggagccggacatggatttcatggtcagtacaaaagtgatcatgcggtattagaaagc
aacgtatttaacgaaaatacttttgtgaaaaaattaaaagacaaagcttggtcgcaatta
ggttcttctggtggtggaaatcactttgtagaattcggaattatggaatttgaaaaagac
gatgagattttaaacattccaaaaggaaaatacgtggcacttttaacacattcaggttcg
agaggattaggcgcaacaattgctgggcattacacaaaattagctaaagacacgtgcaaa
ttaccagaagtagcaaaaaacttagcctatttagatttgaattcacaattgggacaagaa
tattggttggccatgaacttgtctggtgattatgcttcggcttgtcatgaagtgattcat
actaaaatggagaaagcattaggtgctacggttttagcgaaagtagaaaaccatcataat
tttgcttggaaagaaatgtacaataacgaagaagtaattgtacatagaaaaggtgctact
ccagcagcaaaaggcctcatgggaattatacccggaagtatgaccgcaccaggattttta
gtacgaggaaaaggcgaagaaaacgccatcaactcagcttcacatggtgcaggacgacaa
atgagccgaacaaaagctattaaatccattacgaaaaccgacatgcaaaccatcttgaaa
gaccacggtgtaacgttgattggtgctggattagatgaagctccaatggcgtataaagac
atccatcaagtgatggctgcccaacaagaattggttgatgtagttgccaagtttactcca
aaaatggtaagaatggcagatgatggaagtcatgaggattaa
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