Flavobacterium indicum: KQS_12320
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Entry
KQS_12320 CDS
T01781
Symbol
dnaE_dnaQ
Name
(GenBank) Probable DNA polymerase III, alpha and epsilon subunits
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fin
Flavobacterium indicum
Pathway
fin03030
DNA replication
fin03430
Mismatch repair
fin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KQS_12320 (dnaE_dnaQ)
03430 Mismatch repair
KQS_12320 (dnaE_dnaQ)
03440 Homologous recombination
KQS_12320 (dnaE_dnaQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fin03032
]
KQS_12320 (dnaE_dnaQ)
03400 DNA repair and recombination proteins [BR:
fin03400
]
KQS_12320 (dnaE_dnaQ)
Enzymes [BR:
fin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KQS_12320 (dnaE_dnaQ)
DNA replication proteins [BR:
fin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KQS_12320 (dnaE_dnaQ)
DNA repair and recombination proteins [BR:
fin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KQS_12320 (dnaE_dnaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
Intimin_C
DUF2344
DUF7870
Anoct_dimer
FliX
Motif
Other DBs
NCBI-ProteinID:
CCG54369
UniProt:
H8XRD5
LinkDB
All DBs
Position
complement(2616242..2620777)
Genome browser
AA seq
1511 aa
AA seq
DB search
MFLIFDTETTGLPKSWSAPISDTDNWPRCVQIAWQLHDELGNLVEHQDYLVKPEGFNIPF
DAERVHGISTDLANHEGISLREVLEKFNIALSKTKYIVGHNVGFDVNIMGCEFYRVGITS
DLSQKPVLDTCTENTAELLKLPGGRGGKFKLPTLTELNEFLFGEKFAEAHNATADVEATT
RCFLELIKREIFSSEELPVPNDYYVNFRQNNPDVKPIGLKHVNLKTASDELRKRLQSQLP
EGVALISEEEIDLSNVAFAHLHNHSQFSVLQSTMSIPALINNAVKNKMPAVALTDIGNMM
GAFQFVSGIIGHNKTAEGKNKAAEEAGELPTETIVKPIVGCEFYVCENRLDKSKKDNGYQ
VVFLAKNKKGYHNLAKLASYAYTEGMYYVPRIDKDLIVKYKEDIIVLTGSLYGEVPNKIL
NIGENQAEEALLWWKEQFGEDLYIEIMRHNQQDEDAVNQTLIKFAKKHNIKLVATNNTFY
TAKEDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSQDEMKELFKDLPSSIT
SIQEIIDKVEIYSLSRDVLLPKFDIPAEFQVEEDKIDKGVRGENNYLRYLTYEGAKRRYP
EIADETLNPQKTAEIKERLDFELLTISNSGYPGYFLIVQDFIAEARKMGVAVGPGRGSAA
GSAVAYCLGITNIDPIEYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIQKYGANQ
VAQIITYGKMATKSAIRDTARVLDLPLFEADRIAKLIPAMMPSKWNLARFISENEDEVKK
ALKSSEEFDRVRELIDIAKSEDLSGETIQQAKVLEGSLRNTGIHACGVIITPDDITNFVP
VTTAKDSDLYVTQFDNAVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRHGIELDPDTFPI
DDKKTYELFQRGETVGIFQYESAGMQKYMKELKPTVFADLIAMNALYRPGPLEYIPSFIK
RKNGQEPIVYDLDACEEYLAETYGITVYQEQVMLLSQKLANFSKGDADVLRKAMGKKMLD
VLEKMKSKFIEGAVKNGHAEDKLEKIWKDWTAFAQYAFNKSHSTCYAWVAYQTAYLKAHY
PAEYMAAVLSNNMNDIKQVTFFMEEAKRMGLEVLGPDVNESYYKFTVNDNGAVRFGMGAI
KGVGEGAVNTIVEGRKEAPYRSIFDLAKRIDLRAANKKAFENLALAGGFDCFVGTHRAQY
FHTEGDGVTFLEKAMRYGSKYQENENSSQVSLFGESAEVQIPEPTVPPCDDWNTMEKLAR
EKEVVGIYISGHPLDDYKFEMNYFCNTRLEAFKSMEQLVGKNLSFGGIVTNVQHRVAKNG
KGWATFNVDGYDESYEFRIFDEEYLKFRHFLVQNNFAYFRVTIKDGWVNKDTGKKSDPKI
VFTHVQYLQDVLVDFAKKLTIQMPIEELKEQLIQKLNDLFQNHQGNLNVTFEVLELEKVT
RQIERKIEMDEDFSSEEEEGSETIVMESQMEEVEELIIKNKLEMPSRKLKVGVSKELLEE
LEKMQLKFKLN
NT seq
4536 nt
NT seq
+upstream
nt +downstream
nt
atgtttttgatttttgataccgaaactactggtttaccaaaaagctggtcagcacctatt
tctgataccgataactggcctcgttgtgttcaaattgcttggcaattacatgatgaatta
gggaatttagttgagcatcaagattatttggttaaaccagaaggatttaatattcccttt
gatgcagaacgtgtgcacggaatttcaacggatttagccaatcatgaagggatttcttta
cgtgaagtacttgaaaaattcaatatagccttatctaaaacaaaatatattgttggacat
aacgttggctttgatgttaatattatggggtgcgaattttacagagttggaattacatcc
gatttaagtcaaaaaccggttttagatacttgtactgaaaatacagcagaattattaaaa
ttacctggaggtagaggggggaaatttaaattacccacattaacggaattaaatgagttt
ttatttggtgaaaaatttgctgaagctcataatgcaactgccgatgtggaagcaactact
agatgttttttagagttaattaaaagagaaattttttcttctgaagaacttcctgttccc
aacgactattatgttaattttagacaaaataatcccgatgtaaaaccgattggattaaaa
catgttaatctaaaaacggcctctgatgaattaagaaagcgattacaatctcaattgcca
gaaggtgttgctttaatctctgaagaagaaattgatttatctaatgttgcttttgcgcat
ttacacaatcattctcaattttcagttttacaatctaccatgtctattccagcattaatc
aataatgcagtaaaaaataaaatgcccgcagttgctttaacagatatagggaatatgatg
ggggcatttcagtttgttagtggtattataggacacaataaaacagctgagggaaaaaat
aaggcggcagaagaggcgggtgaattaccaacagaaaccatagtaaaacctattgttggc
tgtgaattttatgtgtgtgaaaaccgattggataaatctaaaaaagacaatggttatcag
gttgtttttcttgcaaaaaataaaaaaggctaccataatttagcaaaattagcttcctat
gcttataccgagggaatgtattatgtccctaggattgataaagatttgattgttaaatac
aaagaagacatcatagttttaaccgggagtctttatggtgaagtgcccaataaaatttta
aatattggtgaaaatcaagctgaggaagccttgctttggtggaaggaacaatttggggaa
gatttgtatattgaaatcatgcgtcataatcaacaagatgaagatgcggtaaatcaaacc
ttaattaagttcgcaaaaaagcacaacataaaattagtcgcaactaataatactttttat
accgcaaaagaagatgccaatgcacacgatattcttttgtgtgtcaaagatggagaaaaa
caagccacaccaataggtcgaggtcgtggttatcgctatggattaccaaatcaagaatat
tatttcaaatcacaagatgaaatgaaagagctattcaaagatttgccaagttctattacc
tcgattcaagaaattatagataaagttgaaatttattcgctctctcgtgacgtgcttttg
ccaaaatttgatattcctgccgaatttcaagtggaggaagataaaatagataaaggcgtt
cgaggagaaaataattatttgcgctatttaacctatgaaggtgctaaaagaaggtatcct
gaaatagcagatgagacattaaatcctcaaaaaacggcagaaattaaagagcgcttagat
tttgaattacttactattagtaactctggttatcccggctatttcttaattgtgcaagat
tttattgcagaagcaagaaaaatgggtgttgccgtaggtccaggtcgtggatctgcagcg
ggttcggcagttgcttattgtttggggattacaaatattgacccaattgaatatgatttg
ctttttgagcgtttcttaaatccagatcgtgtgtccatgcccgatattgatattgatttt
gatgatgaaggacgaggacgtgtgatggattatgtaattcaaaagtatggcgccaatcaa
gtagcacaaattataacttatggtaaaatggcaaccaaatcagccattcgggataccgct
cgtgtgctcgatttaccgcttttcgaagccgatcgaattgcaaaattaattccagccatg
atgccaagtaaatggaatttagcccgattcatttctgagaatgaagacgaggtgaaaaaa
gctttaaaatcttctgaagaatttgatcgtgttcgcgaattaattgatattgcaaaaagt
gaagatttatcgggtgagactattcaacaagcaaaagtattggaaggttcgcttcgaaat
acaggaatacatgcttgtggtgtgattattacgccagatgatattactaattttgttccc
gttacaacggctaaagattctgatttatatgtgacacaatttgacaatgccgtggcagaa
agtgcgggattgttaaaaatggacttcttagggttaaaaacgttaaccttaataaaagat
acggttaagttagttaaataccgtcatggaatagaattggatcccgatacctttccaatt
gatgataaaaaaacgtatgaattgttccaacgtggagaaacagtcggtattttccaatat
gaatcggcgggaatgcaaaaatatatgaaggaattaaagccgacagtatttgccgattta
attgccatgaatgccttgtatcgtccaggaccattagaatatattcctagttttattaaa
cgtaaaaatggacaagagcctatagtgtatgatttagatgcttgtgaagaatatttagct
gaaacttatggtattacggtttatcaagagcaggtaatgttgttgtcgcaaaaattagct
aatttttctaaaggggatgccgatgttttgcgtaaagccatgggtaaaaagatgttggat
gttctagaaaaaatgaaatctaaatttattgaaggagctgttaaaaatggacatgcagaa
gataaattagaaaaaatttggaaagactggactgcttttgctcaatatgctttcaataaa
tcacattcaacttgttatgcttgggtggcatatcaaacggcgtatttaaaagcacattat
ccagcagaatacatggcggcggttttatccaataatatgaacgatattaaacaagtaacg
ttctttatggaagaagcgaaacgaatgggattagaggtcttagggccggatgttaatgag
tcgtattataaatttacggtaaatgataatggggcggttcgttttggaatgggagctatt
aaaggtgtaggagaaggagcggtgaatactattgtggaaggtagaaaggaagcaccttat
cggtctattttcgatttagcaaaacgaatcgatttgcgtgcggctaataaaaaagctttc
gaaaatttagctttggcaggtggatttgactgttttgttggaactcatcgagcacaatac
tttcatacagaaggcgatggcgttacgtttcttgaaaaggctatgcgctatggatcaaaa
tatcaagaaaatgaaaattcgtctcaagtgagtttatttggtgagtcggccgaagtacaa
attccagaacctacagtaccaccttgtgacgattggaataccatggagaaattagctcgc
gaaaaagaagtagtgggaatatatatttcaggtcacccgttggatgattataaatttgaa
atgaattatttctgtaatacgcgtcttgaagctttcaaatcaatggaacagttggttggt
aaaaatttatcgtttggagggattgtaacaaatgtccaacatcgtgtggctaaaaatgga
aaaggttgggctacgttcaatgttgatggctatgatgaatcgtatgaattccgaattttt
gatgaagaatatttgaaattcagacatttcttagtgcaaaataattttgcatatttccgc
gttactattaaagatggatgggttaataaagatacaggtaaaaagtccgatcctaaaatt
gtttttactcatgtgcagtatttacaagatgtattggtggattttgctaaaaaattaacc
attcagatgcctattgaggaattaaaagaacagttgattcaaaaattaaatgatttgttt
caaaatcaccaaggaaacttaaatgttacttttgaagttttagagttggagaaagtaaca
cgtcaaattgaacgtaaaattgaaatggatgaagatttttcatcagaggaggaagaaggt
tctgaaacaattgttatggaaagtcaaatggaggaagtagaagaattaattattaaaaac
aagttagaaatgccttcacggaaattaaaagttggggtttcaaaagaattattggaagaa
ttagaaaaaatgcaattgaaatttaaattgaattaa
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