Fischerella sp. NIES-3754: FIS3754_31200
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Entry
FIS3754_31200 CDS
T04195
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fis
Fischerella sp. NIES-3754
Brite
KEGG Orthology (KO) [BR:
fis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fis03016
]
FIS3754_31200
Enzymes [BR:
fis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FIS3754_31200
Transfer RNA biogenesis [BR:
fis03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FIS3754_31200
Prokaryotic type
tRNA splicing ligases
FIS3754_31200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
BAU07194
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All DBs
Position
complement(3590769..3591950)
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AA seq
393 aa
AA seq
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MPYEQLEISTPSPVLSWANHPLGSEEIKMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
IATKEAIIPAAVGVDIGCGMAAIKTPFKSEQLESKLKKIRLDIESAIPTGFNENKEVEKS
VTNWQRWRDFKDLHPGVQNLQEKAMRQMGSLGGGNHFIEVCLDTENRVWLMLHSGSRNIG
NMLAQCHISTAKELAKMAGNKLTDPDLAYFIAGTPEFQAYWHDLQWAQAYARFNRDVMMA
RFKQIIEKHLAGGKVTKPLLQVNCHHNYAEKEVHFGEEVYVTRKGAVRAQTEDYGIIPGS
MGAKSFIVKGKGCASSFCSCSHGAGRLLSRNKAKNVYTLDDLIEQTKGVECRKDTGVLDE
IPGAYKPIDQVMANQSDLVEVVATLKQVICVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccttacgaacagttagaaatttctacaccatctccagttttatcttgggcaaatcac
cctttaggctcagaagaaattaagatggcaaaaaatgtagcatccctgccatttgtgttt
aaacacgtggcattaatgccagatgttcacttaggaaaaggtgctttagttggttctgtc
attgccactaaggaagcaattatccctgcggctgtgggtgtagatattggttgtggaatg
gctgcgatcaaaacaccatttaaaagtgagcaattagaaagtaaactcaagaaaattcgc
ttagatatagaatctgcaattcctacaggttttaacgaaaataaagaagtagaaaaatct
gtaactaactggcaaagatggcgagattttaaagacttgcatccaggggtgcaaaacttg
caagaaaaagcgatgcgacaaatgggttctctaggcggaggtaatcattttattgaagtt
tgtctggatacagaaaaccgagtttggctgatgttgcattctggttctcgcaacatcggt
aatatgcttgctcagtgccacattagcacagctaaggaattggcaaagatggcaggtaat
aaattaaccgatccggacttagcctattttatcgctggtacgccagaattccaggcgtat
tggcatgatttacagtgggcgcaagcatatgcacgtttcaaccgcgatgtaatgatggca
cgttttaaacaaattatcgaaaagcatttagcaggtgggaaagtgacgaaacctttacta
caagtaaattgccatcataattacgctgaaaaagaagtacattttggtgaggaagtgtac
gtaactcgtaaaggtgcggtgcgtgctcaaacagaagattatgggattatacctggttcg
atgggggcaaaatccttcattgtcaaaggtaaaggttgtgctagtagcttttgttcttgt
agtcatggtgctggtcgtttactatcaagaaataaggcaaaaaatgtctatactcttgat
gatttaattgaacaaacaaaaggggtagaatgtcgcaaagacacaggtgttttggatgaa
attcccggcgcttataaacctatagatcaagtaatggcaaatcaatctgatttagtggaa
gttgtagctacacttaaacaagttatttgcgtaaaaggttaa
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