Fischerella sp. NIES-3754: FIS3754_35620
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Entry
FIS3754_35620 CDS
T04195
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fis
Fischerella sp. NIES-3754
Pathway
fis03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fis00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FIS3754_35620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fis03021
]
FIS3754_35620
03400 DNA repair and recombination proteins [BR:
fis03400
]
FIS3754_35620
Enzymes [BR:
fis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIS3754_35620
Transcription machinery [BR:
fis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIS3754_35620
DNA repair and recombination proteins [BR:
fis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIS3754_35620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
BAU07629
UniProt:
A0A0S3TRI2
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All DBs
Position
4118572..4120449
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AA seq
625 aa
AA seq
DB search
MRNTQTNQFDYVKIGLASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKG
IPSYISILLDMPLRDVEQIVYFNSYVVLSPGNAETLSYKQLLSEDQWLEIEDQIYSEDST
LQGVEVGIGAEALLRLLADINLEQEAETLREEITTAKGQKRAKLIKRLRVIDNFIATGSK
PEWMVMTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLNIHQCGLPREMAIELFQPFVIHRLIRSGMVNNIKAAKKLISRSDPSVWDVLE
EVIEGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLASNNILSPATGKPIITPSQDMVLGSYYLTAENPHATKGAGRYFASLDD
VIMAFDQEQVDLHAYIYVRYDGEVESDQADHEPREVIKNDDGSVTKLYKYRRVREDAQGN
LISQYIYTTPGRVIYNKAIQEALAS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacacccaaactaatcagtttgactacgttaaaatcggcttggcatcgcccgaa
cgtattcgtcagtggggtgaaagaacactacccaatggccaggtcgttggtgaagttact
aagccggagacgatcaactatcggactctcaaaccagaaatggatggtttgttctgcgag
cggatcttcggtccggcaaaagattgggaatgtcattgcggtaaatataagagagtacgc
catcgggggattgtttgcgaacgttgtggtgtggaagttaccgaatcaagagtacgccgc
caccgcatgggttacattaaactcgctgcgcctgtagctcacgtttggtatctcaaaggt
attcctagttatatctccatcctgttggatatgccactgcgggatgtagagcaaattgtt
tatttcaattcctatgttgttcttagccctggtaatgctgaaaccctcagctataaacaa
ttactcagtgaggatcagtggctagaaatagaagatcagatttacagcgaagattcaact
ttacaaggtgtagaggtaggtattggtgcagaggcgttactgcgactacttgctgatatt
aacctcgaacaagaagctgaaactctgcgcgaagaaattaccaccgccaaaggtcaaaaa
cgagcgaagctcattaaacgcctgcgggtaatcgacaactttatcgccactggctccaaa
ccagagtggatggtaatgacagtaattcctgtcatcccaccagatttgcgcccgatggtg
cagcttgatggtggacggtttgcaaccagcgacttgaacgatttgtaccggcgagtaatt
aaccgcaataaccgtctggcacgtttgcaggaaattttggctccggagattatcgttcgc
aacgagaagcggatgctacaagaagcggtagacgcattaattgataatggtcgacgcgga
cggactgtagttggagcaaacaatagacccttaaaatctttatcagacattattgaagga
aaacaagggcgcttccggcaaaatttattgggtaaacgggttgactactctgggcgttct
gtaattgtggtggggccaaagttaaatatccaccaatgtggtttgccaagggaaatggca
attgagctattccagccgtttgtgattcatcgcctcattcgtagtggcatggtaaacaac
attaaagctgcgaaaaagctgatctcccggtctgatcccagtgtttgggatgtcttggaa
gaagtaattgaaggacacccagttttactcaaccgcgctcctactctgcaccgcttgggt
attcaggcttttgagccaattttggtagaaggaagagcgatccagctacacccattggtg
tgtccagcttttaacgctgactttgacggtgaccaaatggcggtacatgtgccgttatct
ctggaatcacaagcggaagcacggttattgatgctggcttccaacaacattttgtctcct
gctacaggtaagcccatcattacacctagccaagatatggtgttaggttcgtattactta
accgcagaaaatccccacgctaccaagggtgcaggacgctattttgcttctttagacgac
gtaattatggcttttgatcaggaacaggtagacctgcacgcctatatctatgtccgctac
gacggtgaagttgagtcagaccaagcggaccatgagccacgagaagtgattaaaaatgat
gatggtagtgtgactaagttgtataaataccgtcgagtcagagaagacgctcagggaaat
ctaatttctcagtatatatacacaactcctggtcgtgtaatttacaataaggcaattcag
gaagcgctagcaagttag
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