Fischerella sp. NIES-3754: FIS3754_35630
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Entry
FIS3754_35630 CDS
T04195
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fis
Fischerella sp. NIES-3754
Pathway
fis03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fis00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FIS3754_35630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fis03021
]
FIS3754_35630
03400 DNA repair and recombination proteins [BR:
fis03400
]
FIS3754_35630
Enzymes [BR:
fis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIS3754_35630
Transcription machinery [BR:
fis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIS3754_35630
DNA repair and recombination proteins [BR:
fis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIS3754_35630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Biotin_lipoyl_2
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BAU07630
UniProt:
A0A0S3TRC8
LinkDB
All DBs
Position
4120585..4124775
Genome browser
AA seq
1396 aa
AA seq
DB search
MPPGRYANAVAHGGNPQDRAVSPLARLRDGDRLLGGWTHQLPTTIDKMTNDKMIFRNRVV
DKGQLRNLISWAFTHYGTARTAVMADKLKDLGFRYATKAGVSISVEDLMVPPSKRSLLEA
AEAEIRATEERYQRGEITEVERFQKVIDTWNGTSEALKDEVVSHFKKTNPLNSVYMMAFS
GARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYIISSYGARKGLVDTAL
RTADSGYLTRRLVDVSQDVIIREFDCGTTRGIPIRAMTEGGKTLIRLETRLMGRVVAEDV
VHPTTGEVIAPRNTPISDDLAKIIEKSGVTEVVVRSPLTCEAARSVCQHCYGWSLAHAKM
VDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAKQERAVIDGTVRFPRRLRTRPY
RTRHGEDALYVETNGTLTLDAGNSTSREIAVTQGSTLYVVDGQQVKQGQLIAEVALGGRT
TRANTEKAVKDVASDLAGEVKFADVVAEQKTDRQGNTTTTAARGGLIWILSGEVYNLPPG
AELVVKENDTVATNGVLAETKLTTQHGGVVRLPEATPGKSTREIEIITASVVLDQATVTV
QSSQGKNNYLVSTGNNQVFNLRATPGTKVQNGQVVAELIDDRYRTTTGGMLKYAGVEVQK
KGKAKQGYEVVQGGTLLWIPEETHEVNKDISLLLVEDGQYVEAGTEVVKDIFCQNSGVIE
VTQKNDILREVVIKPGDLLMVDDPEAVMSKDNTFVQPGEELLGQTFNELRYIQYVETPEG
PALLSRLVVEYAVPNYPDVPSTTSVSQQTARSIQLRAVQRLPYKDSERVKCVEGVELLRT
QLVLEIEQEDEQDHTASPLAADIELVPDANDPEIQRLQLVILESLTVRRDITADATQGST
NTTLEVEDGQTIAPGAVVARTQILCKEGGIVRGVKKGTEAVRRCLVLRQQHDMIKMNCAV
QPKVKPGDLVVEGTEIAPGVFAEESGQVVAVKKAESTGETTADSSALATQNYSVTIRVGR
PYRVSGGAILQVEDGDLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEARKPKEACILA
KRAGEVKVIYGDGDEAIAVKVIEPNGVVTDYTIGPGQNLVVTDGQTVSAGQPLTDGPANP
HEILEVFFNLGSEEGVYACASHALQKVQTFLVNEVQMVYQSQGIDIADKHIEVIVRQMTS
KVRVDDGGDTTMLPGELVELRQIEQVNEAMAITGGAKAQYTPVLLGITKASLNTDSFISA
ASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFNTYEEPGIVEDYTDSFSSS
VLDEVEDPLDMVLDDRTARTYNLDSPTLGVGEMTYGSRPKSILDDDDDLIPGEINDLTED
DEDDFDEDDFEDEDDE
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
ttgcctccgggacgctacgcgaacgcagtcgctcatgggggaaacccccaagaccgcgct
gtctcaccgcttgcgcgtctacgtgacggagaccgccttttggggggctggactcaccaa
ctaccaacaactattgacaaaatgactaacgacaaaatgattttccgcaatcgcgttgtt
gacaaaggtcaactgcgtaatttgatttcttgggcgtttacgcactatggtacagcgcgg
acggctgtgatggcggacaaattaaaagatttgggtttccgctacgccaccaaagctggt
gtttccatcagcgtagaagatttgatggttcctccttccaagcgatcgctcctggaagcc
gcagaagcagaaattcgcgctactgaagaacgctaccaacgtggggaaattacggaagta
gagcgcttccaaaaagtaattgatacctggaatggaacttctgaagctctcaaagacgaa
gttgttagccacttcaaaaagacaaatcccctcaactccgtgtatatgatggcattttcc
ggggctaggggtaacatttcccaagtacggcaattggtcgggatgcggggactgatggca
gatccccaaggggaaattatcgacttaccgatcaaaaccaacttccgggaaggactcacc
gttaccgaatacattatttcctcttacggtgcgcgcaaaggcttagtagatacagccctc
cgcacagcagactccggttatctcacccgtcgtctggtggatgtttctcaggatgtgatt
atccgggaatttgactgtggtactaccagaggaattcccatccgggccatgaccgaaggt
ggtaagaccttgattaggctagaaacccgcctcatgggacgagttgtggcggaagatgtg
gtacatcccaccacaggcgaagttatcgcaccccgaaatacaccgatttctgacgacttg
gcaaaaatcatcgaaaaatcaggtgtaactgaagtagtagtgcgatcgcccttgacttgt
gaagcagcgcgatcagtttgccaacattgctacggttggagtttagcccacgccaaaatg
gtagatttgggtgaagctgtaggtattattgctgcccaaagtatcggtgaaccaggtacg
cagctgacgatgcgtactttccacacaggtggtgtattcactggggaagtagctaaacaa
gaacgcgctgtaattgatggtacagtccgtttccctcgccgcttacgcacaagaccctat
cgtacgcgtcacggtgaagatgctttgtatgtagaaaccaacggcacattaactttagat
gctggtaactcaacaagcagggaaattgctgttacccaaggttcaaccctgtacgttgta
gatggacaacaagtcaagcaaggtcaattaatcgcagaagtcgcccttggtggacgtaca
actcgcgctaatacagaaaaagctgtcaaagacgtagcgtctgacttagccggggaagtt
aaatttgccgatgttgtcgccgaacaaaaaactgaccgtcaaggtaacaccaccaccaca
gcagcacgaggtggtttgatctggattttgtcaggggaagtttataacttaccacctggt
gcggaattggtagtcaaagaaaacgataccgtcgctactaatggcgtcctggcagaaacc
aaacttactacccagcatggtggtgtggtacgtttgcccgaagcaaccccaggcaaatct
acacgggaaattgaaattattacagcttctgtagttttagaccaagccacagtcactgtc
caaagctctcaaggtaaaaataactacttagttagcactggtaacaatcaagtcttcaac
ttgagggcaacccctggtacaaaagtccaaaacggtcaggtagtcgccgagttgattgac
gaccgctatcgtaccactaccggtggaatgctcaaatacgctggtgtagaagtccagaaa
aaaggtaaagccaagcaaggctacgaagtggtgcagggcggaactttactgtggattccc
gaagaaacacacgaagttaataaagatatctccttgctgttagtggaagacggtcagtac
gttgaagctggtactgaggtagtcaaagatatcttctgccaaaacagtggcgtcatcgaa
gtcacccagaaaaatgacattctgcgagaagtggtaattaaaccaggagacctgctgatg
gtggatgacccagaagcagtgatgagcaaagataacacctttgtccaacctggtgaagaa
ctgctgggacaaacctttaatgaactgcgctacattcagtacgtggaaacaccagaaggt
cctgccttgttaagtcgtttggtagttgagtatgccgtacccaactatcctgatgtgcct
tctactacatccgtgagccagcaaacagcccgctccattcaattgcgagctgtacaacgg
ctgccctacaaagattctgaacgtgttaaatgtgttgaaggcgtcgaactgctgcgaact
caactagtattggaaattgagcaagaagacgagcaagaccacacagcctcccccttggcg
gcagatattgaattggtacctgatgccaatgatccagaaattcaacgtttgcaactggtg
attttggaatctttaacggttcgtcgagatattaccgctgatgctactcaaggtagtacg
aatacaacccttgaggttgaagacggacaaactattgctcctggtgcagtagtagcacgt
acccaaatcttatgtaaagaaggtggtatcgtccggggcgtcaaaaaaggtacagaagct
gttcgtcgttgcttggtgttgcgtcaacaacacgacatgatcaaaatgaattgcgctgtc
caacccaaagtaaaaccgggtgacttggtggtagagggtacagaaattgctccaggagtc
tttgctgaagaatctgggcaagttgtagctgtgaaaaaagcagaaagtacaggagaaact
acggctgattcatcagcactggctactcaaaactactctgttaccatccgtgttggtcgt
ccctaccgcgtcagtggtggtgcgatcttacaagtagaagacggtgatttggtacagcgc
ggtgataacttggtgttgctagtatttgaacgtgccaagacaggagacatcatccaaggt
ttgcccagaattgaagaacttctcgaagcccgtaagccgaaagaagcatgtatattagct
aagagagcaggagaagttaaggtcatctatggtgatggggatgaagcgatcgccgtaaaa
gtgatcgaacctaacggtgtagtcacagactataccattggccctggacagaacttagta
gttacggatgggcaaacagtcagtgctggacagccactcacagatggtccagccaacccc
cacgagatattggaagtcttctttaaccttggttctgaagagggagtctacgcctgtgct
agtcatgcattacagaaggtacaaaccttcctggtaaacgaagtacaaatggtctatcag
tctcaaggaattgatattgctgataaacacattgaagtgattgttcgccagatgacttct
aaagtgcgggttgatgatggcggtgataccactatgctacctggtgaattggtagaactg
cgtcaaatcgaacaggtaaacgaagctatggcaattaccggtggcgcaaaggcgcaatac
actcccgtattgttgggtattaccaaagcatctttgaatactgatagcttcatctctgcc
gcctccttccaagaaactactcgggtattaaccgaagcagcaatagaaggtaaatctgac
tggttacgtggcttgaaagaaaacgtgattatcggacgattaattcctgctggcacaggc
tttaatacctacgaagaacctggtatagtcgaagactacaccgattccttcagcagtagt
gtcttagatgaagttgaagatccattagatatggtgctggacgatcgcacagcccgtacc
tacaacttggattctccaactctaggagtaggagaaatgacttatggcagcagaccaaag
tcgattttggatgatgatgatgatttgattcctggtgaaatcaacgatctaacagaagac
gacgaagatgatttcgatgaagatgatttcgaggacgaagacgacgaataa
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integrated database retrieval system
