Fischerella sp. NIES-3754: FIS3754_35820
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Entry
FIS3754_35820 CDS
T04195
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
fis
Fischerella sp. NIES-3754
Pathway
fis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIS3754_35820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fis03019
]
FIS3754_35820
03016 Transfer RNA biogenesis [BR:
fis03016
]
FIS3754_35820
Enzymes [BR:
fis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FIS3754_35820
Messenger RNA biogenesis [BR:
fis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FIS3754_35820
Transfer RNA biogenesis [BR:
fis03016
]
Prokaryotic type
tRNA degradation factors
FIS3754_35820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
KH_SLS1_2
aRib
Motif
Other DBs
NCBI-ProteinID:
BAU07649
UniProt:
A0A0S3TRI4
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All DBs
Position
4143796..4145949
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AA seq
717 aa
AA seq
DB search
MGEFEKSISFDGRDIRLKVGLLAPQAGGSVLIQSGDTAVLVTATRSAAREGVDFLPLTVD
YEERLYAAGRIPGGLLRREGRPPEKAILTSRLIDRPLRPLFPSWLRDDLQIVALTLSMDE
LVPPDVLAVTGASIATLMAKIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGS
PDGVIMVEAGANQLPERDIIEAIEFGYEAVQDLIRAQQDLIAELGLEIVHEAPPEADQSL
SNFISDRATEEIKKILSQFDLDKTQRDNALDAVKESIAAAIAELPEEDPIRVAATGDAKA
LDNTFKDITKKLMRRQIIEDNVRVDGRKLDEVRPVSCAVGLLPKRVHGSGLFNRGLTQVL
SACTLGTPGDVQFLNDDLQQDQQKRYMHHYNFPPFSVGETKPLRAPGRREIGHGALAERS
ILPVLPPKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIK
EGDEVRVLTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKISGLSLEIISQAIHQARAAR
LHILEKMLETIDKPRTEMSPYAPRLLTLKIDQDMIGLVIGPGGKTIKGITEETGAKIDIE
DDGTVTISAVDENKAKRAKGIIQGMTRKLNEGDVYVGRVTRIIPIGAFVEFLPGKEGMIH
ISQLADYRVGKVEDEVAVGDEVIVKVREIDNKGRINLTRLGIHPEQAAAAREQATSK
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgggagaatttgagaagtcaatatccttcgatggacgggatattcgactgaaggtgggt
ctactagcaccccaggctggtggatcggtgttgatacaatctggggatacggcagttcta
gttacagctacgcgctcagcagccagagaaggcgttgattttctgcccctcaccgtggat
tacgaagaaagattatacgcagcaggtagaatccctggaggattattgcgacgcgaaggt
cgtccgccagagaaagcaattctcactagtcgtctgattgaccgccctttgcgtcctttg
tttccatcttggttacgggatgatctgcaaattgtagcgttgactctttctatggacgag
ctagtaccgccagatgtgctagctgtgactggtgcttctattgccaccttaatggcaaag
attccctttaatgggcctatggcagccgtgcgcgtcggtctggtgggtgatgattttatt
attaaccccacctatgcagaaatcgaagctggagacctggatttagtcgtagcaggttcg
ccggatggtgtaattatggtggaagcgggagctaatcagctgcccgaacgagatattatt
gaggcgatcgaatttggttatgaagctgtgcaggatttaattcgagcgcagcaagattta
attgcggaactggggttagaaatagtccatgaagcaccaccagaagcagatcaatcactg
agtaactttatcagcgatcgcgctacagaggaaatcaagaaaatcctctcgcaatttgat
ttggataaaacccaacgagataatgccttagatgctgtcaaagaatcaatcgcagctgcg
atcgccgaactaccagaagaagatccaattcgagttgccgcaaccggtgatgccaaggca
ttagacaacactttcaaagatattactaaaaagctgatgcgccgtcagatcatcgaagat
aatgttcgagtcgatggtcgtaagctagatgaagttcgtcctgtttcctgtgctgttggt
ttattacccaagcgggttcatggcagcggcttattcaaccggggtctaacccaagtatta
tctgcttgtactcttggtacaccaggtgatgtgcaattcttaaacgatgacttgcaacaa
gaccagcaaaagcgctacatgcaccattacaacttcccgccgttctccgttggcgaaacc
aaacctctgcgcgcgccgggacgtcgggaaattggacacggagcgctggcagagagatca
atattaccagtgctaccaccaaaagaacaattcccctacgtaatccgggtagtatcggaa
gtactttcttccaatggttcgacttcgatgggttcggtgtgtggttccactctggcttta
atggatgcaggtgtgccaattaccaaacctgttagtggtgcagctatgggtttgatcaaa
gaaggcgatgaagtccgagtcttgacggatattcaaggcatcgaagactttttgggtgat
atggacttcaaagttgcagggacagacagtgggattactgccttgcaaatggatatgaaa
atcagtggtttgtctttggagatcatttctcaagctatccaccaagctagagccgcacgg
ttgcatattctagagaaaatgctcgagactattgacaaaccacgcacagaaatgtcaccc
tatgccccacgtctgttaacgctcaagattgatcaagacatgattggtctagtgatcggg
ccgggaggtaagacaatcaagggtattactgaggaaacaggtgctaaaattgacattgaa
gatgatggcactgtcaccatttctgctgtggatgaaaacaaggccaagagagctaaaggc
atcattcaaggcatgacgcgcaaactgaatgagggtgatgtttacgtaggtagagtgacg
cgaattatacctattggtgcttttgtggagtttctgccgggtaaagaaggcatgatccac
atttctcaactagctgactaccgtgtcggtaaggttgaagatgaagttgcagttggtgat
gaagtgatcgtcaaagtgcgtgaaattgacaacaagggtagaatcaatcttactcgctta
ggcattcatcccgagcaagcagcagctgcgcgcgaacaagcaacctcaaagtaa
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