Fischerella sp. NIES-3754: FIS3754_38190
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Entry
FIS3754_38190 CDS
T04195
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fis
Fischerella sp. NIES-3754
Pathway
fis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIS3754_38190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fis03019
]
FIS3754_38190
03400 DNA repair and recombination proteins [BR:
fis03400
]
FIS3754_38190
Enzymes [BR:
fis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FIS3754_38190
Messenger RNA biogenesis [BR:
fis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIS3754_38190
DNA repair and recombination proteins [BR:
fis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FIS3754_38190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Sigma70_r4_2
GerE
Helicase_Sgs1
HTH_38
Motif
Other DBs
NCBI-ProteinID:
BAU07879
UniProt:
A0A0S3TRZ9
LinkDB
All DBs
Position
4428630..4430789
Genome browser
AA seq
719 aa
AA seq
DB search
MSQYSQLEKALKYHFGYDNFRPGQREIVEDALSNRDLLIIMPTGGGKSLCFQLPALIKKG
LTVVVSPLIALMQDQVEALRKNGVAATFLNSSLNSYQTRSREQYILQGKVKLLYVAPERL
ISDRFLPFLDLIHHQVGISAFAIDEAHCVSEWGHDFRPEYRQLILLRKRYADVPTWAFTA
TATDRVRNDIIQQLGLQNPSIHIASFNRQNLYYEVRPKKKNAYAELLELIRDSEGSGIIY
CLTRKKVDEITFKLQHDKIPALPYHAGLTDEERTQNQTRFIRDDVRVMVATIAFGMGINK
PDVRFVIHFDIPRNLESYYQESGRAGRDGEASRCTLFFSYADVKIIEFLINQKSEPQEQL
IAKQQLRQMIDYAEGTDCRRTIQLSYFGERFPGNCDNCDNCRYPKPVQDWTVEAMKFLSC
VARCKEKFGMGHIIDVLRGAKTQKIAQYEHEQLSTYGIGKDKSVEEWRMLGRSLLHQGLL
EQSTDGYAVLKLNALSWEVMRRQRTVSIPVTVTQKLTWKEDNAKTVEAEMLLQRLRSLRK
QLADEQSVPPYLIFADSTLKLMAQVKPQTKDAFSRLSGVGSHKLNQYGDKFLAEIRAYCQ
EHNAQEPKLNPTSSLTSVSATALQTLLLYQQGLSVSEIAEKRNLRPTTIFSHLCDLIEKN
QPIDINHLVPLEKQQKILQVLEIIGDISLTPIKEYLGDSYSFEEIRLVRSQWRKKSHKS
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagtactctcaattagaaaaagcgctgaaatatcacttcggttatgataatttt
cgccccggacaaagagaaattgttgaagatgcgctttctaatcgggatttgctgattatt
atgcctacaggcggtggtaagtcgctgtgctttcaactaccagcactgatcaaaaaaggc
ttgactgttgtagtctcacctttaattgctttgatgcaagatcaagtggaagcgctgcga
aaaaacggtgtagcagctacatttctcaatagcagtctgaactcttaccaaacgcgatcg
cgtgaacaatacatcctccaaggtaaagttaaattactctacgtcgccccagaacgcttg
atcagtgatagatttctcccatttctagatctaatccatcatcaagttggtatttccgcc
tttgctattgatgaagcgcattgtgtttctgagtggggacacgacttccgcccagaatat
cggcaattaattctactgcgaaaacgttacgctgatgtcccgacttgggcatttacagct
acagctactgatcgcgtccgcaatgatatcattcaacaattggggttacaaaaccctagc
atccacatcgccagcttcaaccgccaaaatctttactacgaagttcgtcctaaaaaaaag
aatgcttacgccgaactcctagaactgatccgcgattctgaaggttcgggaattatttac
tgtttaactcgcaaaaaagttgacgaaatcacctttaaactgcaacatgataaaatacct
gctctcccctaccatgctggtttaacagacgaagaacggactcaaaatcaaactcgcttt
attcgtgatgatgtgcgagttatggtagcgacaatcgcctttggtatgggtatcaataaa
ccagatgtgcggtttgtgattcactttgatataccccgtaacttagaaagttactatcaa
gaatcaggtagggcgggtagagatggggaagcttcacgttgtacactttttttcagttac
gctgatgtcaaaatcatcgaatttctcatcaatcaaaaaagcgaaccacaagaacagtta
atagccaaacaacaattgcgacagatgatagattacgccgaaggtacagactgtcgccgc
acaattcaactcagttattttggcgaacgttttccggggaattgtgataattgcgataac
tgtcgctatcctaaaccagtgcaagattggacagtggaagcaatgaaatttttatcttgt
gtcgcccgttgcaaagaaaagtttggcatgggacatattatagatgttctacggggagca
aaaacccaaaaaatcgctcaatacgaacacgaacaactatctacctacggtatcggtaaa
gataaaagtgtggaagagtggcggatgctgggacgttccttattacatcaaggtttacta
gaacaaagcaccgatggttacgccgttttaaaacttaacgccttaagttgggaagtcatg
cggcgacagcgtaccgtttctattcctgtcactgtcacccaaaagcttacttggaaagag
gataacgctaaaactgtagaagcagaaatgctattgcagaggttgcgatcgctacgtaaa
caacttgcagatgaacaatctgttccaccttatcttatcttcgccgactctactctcaaa
ttaatggctcaagttaaaccccaaaccaaggacgcatttagccgactttctggggtaggt
agccataaactaaatcaatacggcgataaatttcttgccgaaatccgtgcttattgtcaa
gaacataatgctcaagaaccaaaacttaatcctacatcttccctgacttcagtttctgca
acagcattgcaaactttgctgttatatcaacaaggcttaagcgtttccgaaattgctgaa
aaacgcaacctacgtccaacaactatttttagtcacctctgcgatttaattgagaaaaat
caacctatagacataaatcacttagtaccactagaaaaacagcaaaaaattttgcaagta
ttagaaattattggagatatttcccttacccccattaaagaatatcttggtgatagttat
agctttgaagagattcgtttagttagaagtcagtggcgcaaaaagagtcacaaaagctaa
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