Fischerella sp. NIES-3754: FIS3754_42430
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Entry
FIS3754_42430 CDS
T04195
Name
(GenBank) ATP-dependent DNA helicase, Rep family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fis
Fischerella sp. NIES-3754
Pathway
fis03420
Nucleotide excision repair
fis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FIS3754_42430
03430 Mismatch repair
FIS3754_42430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fis03400
]
FIS3754_42430
Enzymes [BR:
fis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FIS3754_42430
DNA repair and recombination proteins [BR:
fis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FIS3754_42430
MMR (mismatch excision repair)
Other MMR factors
FIS3754_42430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
DEAD
Viral_helicase1
ResIII
DUF3553
Motif
Other DBs
NCBI-ProteinID:
BAU08301
LinkDB
All DBs
Position
complement(4886418..4888754)
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AA seq
778 aa
AA seq
DB search
MTIDFLSHLNPSQRRAVEHFCGPLLVVAGAGSGKTRALTYRIANLILQHRVDPENILAVT
FTNKAAREMKERIQKLFAEQLAIAEFGERFDLLPEYDQVRLKSRVWRSYIKELWCGTFHS
LFSRILRFDIEKYQDEKGRRWNRNFSIFDESDAQSLVKEIVTKQLNLDDKKFEPRSVRYA
ISNAKNKGLSPHDYEREQPNYRGRVIAEVYSKYQDRLAENNALDFDDLILVPVKLFQQNE
QVLGYWYRKFRHILVDEYQDTNRTQYDLIRLLVTHGETNKNNWDWRDRSVFVVGDADQSI
YSFRMADFTILLEFQQDFGDGLPDEDTRTMVKLEENYRSCENILQAANQLIENNTQRIDK
VLRATRGAGEQIYFFKADDEIAEAEFVINQIRNLERENPELNWGSFAILYRTNAQSRPFE
DLLVRAQIPYTVVGGLKFYDRKEIKDVLAYLRAIANPADTVSLLRVINTPRRGIGKATID
NLVGAAQELGTTLWEILSDETSVNTLAGRSAKSVNNFAAMISRWQAELATVPASQILQGI
LEDSGYVQDLMSQGTDEAEDRVQNVQELFNAVRQFEEENEEVSLGDFLASAALSSDLDNL
KEGQAAVSLMTLHASKGLEFPVVYMVGLEQGLFPNYRSMNDPSALEEERRLCYVGITRAQ
ERLFISHARERRLYGNREPAVRSQFLDELPEELLVTHRPGRVAYSKTANGSIPQRATKAR
QSVEEKWQVGDRVLHKIFGEGEITHVFGSGRKISVAIKFDQLGKKIVDPQVAQLQRVD
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgactattgactttctcagtcacctcaaccccagtcagcgccgcgctgttgaacacttt
tgtggccctttgctagttgttgctggtgcaggttccggcaaaacacgagcgcttacttat
cgcattgctaatctcattttgcaacatcgtgtcgatcctgaaaatatcctggcagtgact
ttcaccaacaaagctgcacgggaaatgaaagaacgtattcaaaaattatttgccgaacaa
ttggcgatcgcagaatttggtgagcgttttgacttactgccagaatacgatcaagtcaga
ttaaaatcccgagtttggcgttcttatatcaaagaattgtggtgtgggactttccacagt
ttgttttctcggattctccgctttgatatcgaaaaataccaagatgaaaaaggacgtcgt
tggaatcgtaatttttctatttttgatgaatctgacgcccaaagtctggtgaaagaaatc
gtcactaagcagttaaacttagacgataaaaaatttgaaccacgttcggtacgctacgcc
attagcaacgccaaaaacaaaggtttatcaccccacgattatgagagggaacagccaaat
taccgaggaagagtgatcgcggaagtttatagtaaatatcaagatagactggcagaaaat
aatgccttagattttgatgatttaattctcgtacctgtaaaattgtttcagcaaaacgag
caggtgttgggttattggtatcgcaagtttcgccatattttagtagatgagtatcaagat
actaaccggactcaatatgatttgattcggttattggtgacgcatggtgaaacaaataag
aataattgggattggcgcgatcgctcggtttttgttgttggtgacgctgatcaatcaatc
tattcttttcggatggctgactttactattttgcttgagtttcagcaagactttggtgat
ggtttgccggatgaagataccaggacaatggtaaagctagaagaaaattatcgctcctgt
gaaaatattctccaagctgccaaccaattaattgaaaataatacccaacgcattgataaa
gttctccgcgctaccagaggtgcaggtgaacagatttattttttcaaagctgatgatgaa
attgcggaagccgaatttgtgatcaatcaaattcgcaatttagaaagagaaaacccggaa
ttaaactggggaagttttgctatactttatcgcaccaacgcccaatctcgcccctttgag
gatcttttagtccgcgcgcaaattccctacaccgttgtcggtgggttaaaattttatgat
cgcaaagaaattaaagatgtactcgcctatttaagagcgatcgctaaccccgcggataca
gtcagtttattacgggtaatcaacactccgcgccggggaatcggtaaagcgacaattgac
aacttagttggtgctgctcaagaattaggcacgactttgtgggaaatactgagcgatgaa
acatcagttaataccttagctgggcgttctgccaagtctgtaaataacttcgcagccatg
attagccgttggcaagcagaattagcaaccgtgccagcttcccagattttacaaggtata
ttagaagactctggatatgtgcaagacttaatgagccagggaacagatgaagcggaagac
agagtccaaaacgtccaggaattgtttaacgccgtacgccaatttgaagaggaaaacgaa
gaggtttctttgggagatttccttgctagtgctgctctgagttccgatttagataatctc
aaagaaggacaagcagctgtttccctgatgactctccacgcttctaaggggttagagttt
cctgtggtgtacatggtggggttagaacaggggctatttcctaactaccgttccatgaac
gatccctcagctttagaagaagaacgccgcctctgttatgtaggaattactcgcgcccaa
gaaaggttatttatctcccacgcgcgggaacgccgcctttatggaaatcgggaacccgca
gtgcgatcgcaattcctcgacgaattaccagaagaattattagttacccatcgtccgggt
agagttgcttacagcaaaactgccaacggtagcattccacaacgcgcaacaaaagccaga
caaagcgttgaggaaaaatggcaagtaggcgatcgtgtcttgcacaaaatctttggcgaa
ggtgaaattacacacgtctttggttctgggagaaaaatttctgtagcgattaagtttgat
caacttggtaaaaaaattgttgatcctcaagttgcacagttacaacgggtggattag
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