Faecalibacillus intestinalis: Fi14EGH31_03320
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Entry
Fi14EGH31_03320 CDS
T06868
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fit
Faecalibacillus intestinalis
Pathway
fit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fi14EGH31_03320 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fit03019
]
Fi14EGH31_03320 (rnr)
03016 Transfer RNA biogenesis [BR:
fit03016
]
Fi14EGH31_03320 (rnr)
Enzymes [BR:
fit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Fi14EGH31_03320 (rnr)
Messenger RNA biogenesis [BR:
fit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Fi14EGH31_03320 (rnr)
Transfer RNA biogenesis [BR:
fit03016
]
Prokaryotic type
tRNA degradation factors
Fi14EGH31_03320 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_HELZ2
PF0610-like_N
Motif
Other DBs
NCBI-ProteinID:
BCL56620
UniProt:
A0A7I8DYS0
LinkDB
All DBs
Position
330880..333060
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AA seq
726 aa
AA seq
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MKERILDILKDKERSIHELQHVLDLNNSEGFTVLLKALNQLEDEGKIVRNDKNEYLLIEN
SNYIVGVLHINKRGFGFVIIDEESDDIFISSRDLKDAFNMDTVMVELKKHQTGSRQEGRI
VKVIERGQTRLVGLLKNAKRELVFDADDQKFTQPIYIDHAHSHGAVAGHKVVVEIKTYKP
YLKGNVVEILGHVGDPGVDILSVVSQHEAHVEFPKEVYEQIESIENEIDQEEAKTRTDLR
NETIVTIDGDDAKDLDDAISLRRLKNGNYYLGVHIADVSYYVEEGSELDKEALARGTSIY
LVDRVIPMLPHKLSNGICSLNPHVDRFAISCFMEITPQGEVIDHDIVESVINSTERMTYN
NVNKILAGDKKLQEEYSHVCDLFFLMKELAEILQKTREDRGAIDFDTNEAKVLVDEKGKP
IDVVLRQRGESDRIIESFMLVANETVAKHFKWLDLPFIYRVHENPKVDKLRKFSTISRTL
GYTIKGSLEDIHSKELSKIVEASKGTDEHVIISTLLLRCMAKARYDEQCLGHFGLADEYY
THFTSPIRRYPDLMVHRLIRTYLFKKKLDQETLFHFASIMQNVADQASSLERKAIDIERE
VDDMKMAEYMEDHIGETFEGIVSSITNFGMFVELPNTIEGLIRMEDLVDDFYYFDDINLQ
LIGKRTGRRFKMSDKVKIKVSAASKREKTIDFQIVGMKSNKKKKKTVIINKRRDRKPKQK
FKRKRR
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaagaattttggatatattaaaagataaagaaagatcaattcatgaattacaa
catgtattagatctaaataatagtgaaggttttacagttttgcttaaagctttaaatcaa
ttagaagatgagggtaaaattgtaagaaatgataaaaatgaatatttattaatagaaaac
tctaattatattgtaggtgttttacatattaataaaagaggttttggttttgtcattatt
gatgaagaaagtgatgatatttttatttcttcaagagatttaaaagatgcttttaatatg
gatacagtcatggttgaacttaaaaagcatcaaacaggatcgcgtcaagaaggtagaatt
gttaaagttattgaaagaggacaaacaagacttgttgggctgttgaaaaacgctaaaaga
gaacttgtctttgatgcggatgatcaaaagtttacacaacctatttatatagatcatgca
catagtcatggtgcagtagctggacataaggttgttgtcgaaattaaaacgtataaacct
tatttaaaaggaaatgtcgtagaaattttaggacatgtaggagatccaggggttgatatt
ttatctgttgtttctcaacatgaagcacatgttgaatttcctaaagaagtttatgaacaa
atcgaatcaattgaaaatgaaattgatcaagaagaagctaaaacaagaactgatttaaga
aatgaaacgattgttacgattgacggtgatgatgccaaggacttagatgatgcaatttct
ttaagaagattaaagaatggaaattattatttaggggtacatattgctgatgtttcttat
tatgtagaagaaggatctgaattagataaagaagcacttgcaagaggaacttctatttat
ttagtggatcgtgttattccaatgcttcctcataaattatctaatggaatttgttcactc
aatcctcatgtggatcgttttgcaatttcatgttttatggaaattacccctcaaggggaa
gtcattgatcatgatatcgttgaatcagttattaattcaactgaaagaatgacttataat
aatgttaataaaatacttgcaggggataaaaaactacaagaagagtatagccatgtatgt
gatttatttttcttaatgaaagaacttgctgaaattttacaaaaaacaagagaagatcgt
ggagcaatcgattttgatacaaatgaagctaaagtattagttgatgaaaaaggtaaacca
atagatgttgttttaagacaacgtggagaaagtgaccgtatcattgaatcatttatgtta
gttgccaatgaaacagttgcaaaacattttaaatggcttgatttaccatttatctatcgt
gttcatgaaaatcctaaggtagataaattaagaaaattctctacaatttctagaactcta
ggttatacaataaaaggttcattagaagatattcattcaaaagaattaagtaagatcgtt
gaagcaagtaaaggaacagatgaacatgtcattatttctacattacttcttcgttgcatg
gcaaaggcaagatatgatgaacaatgtttaggacattttggtttagcagatgaatattat
acacattttacatcaccaattagacgttatcctgatttaatggttcatcgtttaattcgt
acgtatttatttaaaaagaaattagatcaagaaactcttttccattttgcttctattatg
caaaatgttgctgatcaagcttcttcacttgaaagaaaagcaattgatattgaacgtgaa
gttgatgatatgaaaatggctgaatatatggaagaccatattggtgaaacttttgaagga
attgtttcttcaattacaaactttggtatgtttgttgaacttccaaatacgattgaagga
ttaattcgtatggaagatcttgtagatgatttctattattttgatgacataaatctacaa
ttaattggaaaaagaactggaagacgatttaagatgtctgataaagtcaaaattaaggtt
tcagctgcttcaaaaagagaaaaaacgatagattttcaaattgttggtatgaaatctaac
aaaaagaagaaaaaaactgttataataaataagcgacgagatagaaagccaaaacaaaag
tttaaaagaaaaagaagatag
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