Fructilactobacillus ixorae: M8332_01430
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Entry
M8332_01430 CDS
T08281
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fix
Fructilactobacillus ixorae
Pathway
fix03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M8332_01430 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fix03400
]
M8332_01430 (mfd)
Enzymes [BR:
fix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M8332_01430 (mfd)
DNA repair and recombination proteins [BR:
fix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M8332_01430 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
AAA_22
SNF2-rel_dom
IstB_IS21
UB2H
CdvA
Motif
Other DBs
NCBI-ProteinID:
USS93899
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All DBs
Position
303098..306637
Genome browser
AA seq
1179 aa
AA seq
DB search
MVKLTEVFEALPQYQTIMDQLQPASRQLVTGTSGSAQKLLLQTMVQQRQQPLLYVTDTLE
HAEQAVKTFSTGLTDVPVLLFPAEELVAAEVATSSPEFRAERVQAMEALVAGKPAVVVAT
TAGLKRYLPEPTAFQAAALTVNLGADWERAALQTQLVEMGYVRKNLVAVPGEFAIRGSIV
DIYPLNASDPVRLDFFDTEVDSLRSFAVATQRSIENLTTVTILPATDFLPTAADREHARQ
AIHKQLTTLTNEQARTELAELAQEVTTKVTDPAWQAYASLLFRKETSILAYLPATGVVAF
DDYQRIREANQQLERDEVNWQTSVSAQHPGLADQKVSLNLTTVLKASHQPWLLLSLFQKG
LGRMRLDDISEIKVRPMQRFFGQMPMLKTEMERYQSEQTTVVIMVGSQDRLAKVQQTLQD
FGVKAVATTLSTLVPSRIQIVTGTLQEGFELPAANFAVLTERELFQRVTERAKPQRIRHQ
RFTNAERIKSYTDLKPGDYVVHVNHGIGRYDGLQTMEVDGKHQDYLTITYQKNAQIFIPV
TQLNLIQKYVAAEGQAPRLNQLGGNEWAKTKSRVAEKVDDMADELVDLYAQRAQTPGFAF
PADDAYQAEFEAAFPYQPTPDQIRSTAEIKHDMEQPHPMDRLLVGDVGYGKTEVAMRAAF
KAVEAGKQVAFLVPTTVLAQQHYETLTSRFEDFPVEIGVLSRFNSAQQTKQTLADLKAGR
LDILVGTHRLLSNDVQYHDLGLLIVDEEQRFGVKHKEKLKELKQNVDVLTLTATPIPRTL
NMSMMGVRDLSVIETPPANRYPIQTYVMEQNDAAIVDGIRRELQRDGQVFYMHNRVKDIE
QKVDKLQTLLPDARIGYIHGQMTERQMEQILYDFMNGQYDVLVTTTIIETGIDMPNVNTL
FVEDADRMGLAQLYQIRGRIGRSNRVGQAYFMYQPDKVLTEAGENRLEAIKDFTELGSGF
KVAMRDLSIRGAGNVLGRAQHGFIDSVGYDMYTKMLNDAVARKQGQATQPTHPDASVDLG
VEAYLPDTYIPDQQQKIEIYKRMRQLENHDQFTELQSDLIDRFGEYPVAVARLLTIDLIK
SLADEAFIEQIKRTGQTLTVTFSRQVSDASQSQTILRALATTKFRSTIKQVNGRFQVNLV
IQPTMPEEEWLAQLNQFVQALVSQDQPEVATRKDEMNAN
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atcgtgaaattaaccgaagtttttgaagcgctcccccagtaccaaacaatcatggatcaa
ctccagccagcatcccgccaattggtaactgggaccagtggtagtgcacagaaattactg
ttacagaccatggtccaacaacgccagcaaccgctcttgtacgtaaccgatacgttagaa
cacgctgagcaggccgttaaaacttttagtactggtttgactgatgtgcccgtacttctc
tttccagccgaagagttagtggccgctgaagtagccaccagttctccagaatttcgggcg
gaacgggttcaggcaatggaggccttggtggctggcaagccggcggtcgtggttgcgacc
acggcgggtttgaaacgttatttaccagaacccactgcttttcaggcagcggccctgacc
gtaaacctcggagctgactgggaacgggcggcccttcagactcagttggtggaaatggga
tacgtccgcaagaatctagtcgcagtgcctggggaatttgcgattcgtggttccattgtc
gatatctatccgttaaacgcctctgatccggttcgcttagatttttttgatacggaggtt
gattctctgcgtagttttgccgtggcgacccaacggagtattgaaaatttaacgacagtt
acgattcttccagcgacggatttcttgccaacggctgccgaccgagaacacgctcgccag
gcgattcacaagcagttaaccacgcttactaatgagcaggcgcggaccgaattagccgaa
ctagctcaggaagtgacgaccaaggtcacggatcccgcttggcaggcctatgcctcgtta
ttgtttcgaaaagaaacgtcaattttggcgtacttaccagctacgggcgtggttgcattc
gatgattaccaacgaattcgggaggctaatcagcaactcgaacgcgatgaagtaaactgg
cagacctcggtttctgcccagcatccgggattagcagaccaaaaggtgagtttaaacctc
accacggttttaaaagcaagccaccagccatggttactcttgtccctatttcaaaagggc
ctaggacggatgcgcttggatgacatcagtgagattaaggtccgacccatgcaacggttt
tttggacagatgcccatgcttaaaaccgaaatggagcgctaccagtccgaacagacgacc
gttgtaattatggtgggcagtcaggaccgtctagcaaaggtgcaacaaacgttgcaggat
tttggggtcaaagcagtggccaccaccctttccacgttggtgccaagtcgcatccaaatt
gtaacgggaacgctgcaggaggggtttgaactgccagccgcgaactttgcggtgttgacg
gaacgtgaactgtttcagcgggttacagaacgcgctaaaccccaaagaatccggcaccag
cgctttacgaatgcggaacggattaaaagttacacggacttaaagcccggggactatgtc
gtacatgttaaccacggaattgggcgctacgatggcctgcaaaccatggaagtggatggg
aaacaccaggattacctcaccatcacctaccaaaaaaacgcccaaatttttattcccgtg
acccaactgaatttaattcaaaagtacgtggcggcagaaggtcaagctccccggttgaat
caactcggggggaacgaatgggctaaaaccaaaagtcgggtggcggaaaaagttgatgat
atggcggatgaactcgttgacttatacgcccaacgggcccagacgccgggctttgccttt
cctgctgatgatgcctaccaggccgaatttgaagcggcgtttccctatcaaccaactccc
gatcaaattcggagtaccgctgaaattaaacatgacatggaacaaccccacccgatggac
cggttgttagtcggcgacgtgggctacgggaaaacggaagtggccatgcgagcggcgttt
aaagccgtggaagcggggaagcaggtggccttcttggtgccaacgaccgtgttagcgcag
caacattatgaaactttgactagtcgctttgaggattttccggttgagattggcgtttta
tcacggtttaacagcgcgcagcaaaccaaacaaaccctggcggatttaaaggctggtcgc
ctggatatcctagtggggacccaccgcttattatccaatgatgtgcagtaccatgattta
ggactgttaattgtggatgaagagcaacggtttggggtcaagcataaggaaaaactaaaa
gaattaaagcaaaatgttgacgtcctaacgctcacggccacccccattccacggacttta
aacatgtcgatgatgggggttcgggatttatccgtgattgagacaccacctgcgaaccgg
tacccaattcaaacctacgtgatggaacaaaatgacgccgcaatcgtcgatggaattcgg
cgcgaactccaacgcgatggtcaggttttttacatgcacaatcgagtgaaagacatcgag
caaaaggtggacaagttacaaacattactgccggatgcgcgaattggttacattcacgga
caaatgaccgaacggcagatggaacagattttgtacgactttatgaacggacagtatgac
gtattggtaacgaccaccattattgaaacggggatcgatatgcctaacgtcaacacgtta
ttcgttgaagatgccgatcgaatggggcttgcccagttgtaccaaattcggggtcggatt
gggcgtagcaatcgagtcggccaggcgtacttcatgtatcaacctgacaaggtgttgacc
gaagcgggcgaaaaccggctggaggccattaaggactttacggagttagggtccggcttt
aaggttgccatgcgggatctgtccatccgcggcgctggaaacgtgttaggccgggcccag
cacgggttcattgattcggttggttatgatatgtataccaagatgttaaatgatgcggtg
gcccgcaaacaggggcaggcaacccaaccaactcatcccgatgcgagtgttgatttgggc
gttgaagcttatcttcctgatacgtatattccagatcaacaacaaaaaattgaaatctac
aagcggatgcgtcagttagaaaatcacgatcagtttaccgaattacaaagtgatttaatt
gaccggttcggtgagtatccggtggccgtggctcgcttacttacgattgatttgatcaag
tccctggcggatgaagcgtttattgaacaaattaagcggacggggcagaccctgaccgtg
acctttagccgtcaggtttcagacgcatcgcagagccagacaattttacgggcgctggct
accaccaagtttcggtcgacaattaaacaggttaacggtcggtttcaagttaacctcgtc
attcaaccaacgatgccggaagaagagtggctggcgcaacttaaccagtttgtgcaggcc
ttagtgtctcaggatcaaccagaagtagcaactcgaaaggatgaaatgaatgcgaattga
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