Fructilactobacillus ixorae: M8332_03715
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Entry
M8332_03715 CDS
T08281
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fix
Fructilactobacillus ixorae
Pathway
fix03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fix00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M8332_03715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fix03019
]
M8332_03715
03400 DNA repair and recombination proteins [BR:
fix03400
]
M8332_03715
Enzymes [BR:
fix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M8332_03715
Messenger RNA biogenesis [BR:
fix03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M8332_03715
DNA repair and recombination proteins [BR:
fix03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
M8332_03715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_22
Death
LysR_substrate
PsaF
Motif
Other DBs
NCBI-ProteinID:
USS92751
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All DBs
Position
complement(760305..761717)
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AA seq
470 aa
AA seq
DB search
MDQLTQLLQNKFGFSRFRPGQRETLERLQHRQSVLAVLPTGAGKTLIYQLYGALLDRPVI
IVSPLLSLMTDQVERMQYGGEKRVVALNSQQSWAERQQTLADLSQYRFIFISPEMLANQT
VLRALQQLDIGLFVIDEAHCISQWAVDFRPDYLDLGKYWRALGTPQLLLLTATASQRVQD
DIIKKLQAPAVQKLVWNVDRSNIFLAEQTLATETAKQDYLVKFVQQITGPGIIYFSSKKV
ANQMTAKLQAETDLRVAAYHADLDTAARFTIQHQFMDDELQLICATSAFGMGIDKANIRF
VVHYHLPQDLESYMQEIGRAGRDEHQSLALLLYVPGDEQLSLTLVQRSIPTEHELELFEQ
HQSATLNDQVRRLLQYYQDHNVDRTTLLQVFQAERKRKEQAILLVVRYALTTECRRTALL
SRFSSTKTADITWCCDNEQPDWTVDQLGLAPTAPVAVKFRDWRQIIAELF
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggatcagctaacgcaactgttacagaataaatttgggttttcccgctttcgtcccggt
cagcgagagacgctcgaacggttacagcaccggcaatcggtactggccgttttgccaacg
ggagcgggcaaaaccttgatttaccagttgtacggcgcattgcttgaccgccccgtgatt
attgtttcgcccttattatcgctcatgaccgatcaagtagagcggatgcagtatgggggt
gaaaaacgggtggtagcccttaattcccagcaaagttgggcagaacggcaacaaacgctc
gcggacctttcgcagtaccggtttatcttcatttctcctgaaatgttggccaatcaaacg
gtgcttcgcgcactccagcagttagacattggcctctttgtgattgatgaagctcactgt
atttctcagtgggcggttgattttcgccccgattatttagaccttggcaaatactggcgg
gcgttaggaacgccacagctcttgttattgaccgcgacggcgtcacaacgagttcaggat
gatatcatcaagaaattacaggccccagctgtgcaaaagctggtctggaacgttgaccgg
tcaaacatttttctagcggaacaaacgctggcaacggaaaccgctaagcaggattatctg
gtgaaattcgtgcaacagattaccgggccggggattatttatttttccagcaaaaaggtt
gccaatcaaatgaccgcaaaactccaggcagaaacggatctgcgggtggcggcctatcac
gccgatttagataccgcggcgcgcttcacgattcaacaccagtttatggatgacgagctc
caactaatttgtgccacttctgcgtttggaatggggattgataaagctaacatccggttt
gtagttcattaccacttaccccaggatttagaaagttacatgcaagaaattggacgagct
ggtcgggatgaacaccagagccttgctttactcctctacgttcccggtgacgaacagtta
agcttaacgctcgtgcaacggagcattccaacggaacatgagttggaattgtttgaacag
catcaatccgctactttgaatgaccaggttcggcggttgttgcagtattatcaggatcac
aacgttgaccggacgacgctgttacaggtctttcaagcggaacgaaagcgcaaggaacag
gccattttactggtggtgcggtatgcactgaccaccgagtgtcggcgcacggcattgctc
agtcgtttttctagtaccaaaaccgctgacataacctggtgttgtgataatgagcaaccg
gactggacggttgaccagttaggattagcgcccacagcacccgtggccgttaaatttcgg
gattggcggcaaattatcgcggaattattttaa
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