Fructilactobacillus ixorae: M8332_04415
Help
Entry
M8332_04415 CDS
T08281
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fix
Fructilactobacillus ixorae
Pathway
fix03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fix00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M8332_04415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fix03019
]
M8332_04415
Messenger RNA biogenesis [BR:
fix03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M8332_04415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
USS92881
UniProt:
A0ABY5C6G1
LinkDB
All DBs
Position
904324..906009
Genome browser
AA seq
561 aa
AA seq
DB search
MSKLNVKNNETAIYGVGGLGEIGKNTYGVQFQDEIILIDAGIKFPESSQLGIDYVIPDYQ
YLVENQDKIKALVITHGHEDHIGGIPFILKAINVPVYAGPLALALIKGKLEEHGMLKQTE
LHAIDETTVLKFKKTSVSFFRTTHSIPDALGVAVHTPDGVIVETGDYKFDLTPVTNTPPD
LQTMAKLGEEGVLCLMADSTNAEKPVWTKSERYVSDSVRKIFKRVKGRIIFATFASNLSR
VMTAIDAAYQNGRKIAVFGRSMEAAVVNGRELGYIKVPDKAFVDANQLKSLPADKVMILC
TGSQGEQMAALSRIANGTHRQISIEPGDTVVLSSNPIPGNVLSVNRVVDELEEAGATVIK
GYANHIHTSGHGGQEEEKLMIRLMKPKFFVPIHGEYRMQKIHMGLAEQCGIPKDHCFILK
NGDVLALTRDSARMAGNFAAGDVYIDGNGVDTVTEQVIEDRQLLSEEGLVVVVATINLKD
KEIQSGPDLLSRGFVYMRESGELLDQGRKLVFRTIRRAMNNKNASEKTIKKAVVKELSNF
LYEKTERHPLVLPMLIMNNTK
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaactaaacgtcaaaaacaacgaaacggcgatttatggcgttggtggtctaggt
gaaatcggaaaaaacacatatggtgttcagttccaagatgaaatcattctcattgatgcc
ggaattaagtttccggaaagcagccaactcgggattgattacgtgattccagattatcaa
tatctggtcgaaaaccaagataagattaaggctctagtcatcacccacggtcacgaagac
catatcggtgggattccctttatcctcaaggctattaacgttccggtgtatgccggtccc
ctcgccctcgcgttaattaaaggtaaattagaagaacacggcatgttaaaacaaaccgag
ttacatgccattgatgaaaccaccgtcttaaagtttaaaaagaccagcgtctcgtttttt
cggactacgcactcgatccctgatgcgctgggggtcgcggttcatactcccgatggggtg
attgtcgaaactggtgattataagtttgatctgaccccggtgaccaacacaccgcctgac
ttacaaacgatggccaagctcggtgaagaaggcgtcctgtgcctgatggctgacagtacc
aacgccgaaaaaccagtgtggaccaagtccgaacgctacgttagtgattcggttcgcaaa
attttcaaacgggtgaaggggcggattatttttgcaacctttgcttcaaacctctcccgg
gtgatgacggcgattgacgccgcctaccaaaacggccgtaaaattgccgtgtttgggcga
agcatggaagctgccgttgtcaacggccgggaactcggttacatcaaggtccctgataag
gcctttgtcgatgctaaccaacttaaatccctcccggccgataaggtcatgattctatgt
accggttctcaaggcgaacaaatggccgccctgtcccgaattgccaacggtacccaccgg
cagatctcaattgagccgggcgatactgtagtcctttccagtaaccccattcccggaaac
gtcttaagtgtgaaccgggtagttgacgaactcgaagaagcgggcgccaccgtcatcaag
ggttatgctaatcacatccacacttctggtcacgggggccaagaagaggaaaaattgatg
attcgcctcatgaagccgaagttcttcgtgccgattcatggtgaataccggatgcaaaaa
attcacatggggcttgccgaacagtgtgggattcccaaggatcactgctttatcttgaaa
aatggagacgtgctcgccctgactagggacagtgcgcggatggcaggtaactttgccgcc
ggagacgtttacattgatggtaatggggttgatacggttaccgaacaggtaattgaagac
cggcaactgctttctgaagaaggcctcgtggtggtcgttgctaccattaatttgaaggac
aaggaaattcaatctggtcccgatcttctttcccggggctttgtttatatgcgtgaatcc
ggcgaactgctcgatcaaggtcgtaaattggtctttcggaccatccggcgggcgatgaat
aacaaaaacgccagtgaaaaaacgattaaaaaggccgttgtcaaagagttatccaacttc
ctctacgaaaagacggaacgccacccgttggtcctccccatgctaattatgaataacacg
aagtaa
DBGET
integrated database retrieval system
