Fructilactobacillus ixorae: M8332_05270
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Entry
M8332_05270 CDS
T08281
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fix
Fructilactobacillus ixorae
Pathway
fix03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fix00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M8332_05270 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fix03021
]
M8332_05270 (rpoC)
03400 DNA repair and recombination proteins [BR:
fix03400
]
M8332_05270 (rpoC)
Enzymes [BR:
fix01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M8332_05270 (rpoC)
Transcription machinery [BR:
fix03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M8332_05270 (rpoC)
DNA repair and recombination proteins [BR:
fix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M8332_05270 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
USS93018
UniProt:
A0ABY5C5Z5
LinkDB
All DBs
Position
complement(1038445..1042092)
Genome browser
AA seq
1215 aa
AA seq
DB search
MVDVNKFKSMQVGLAAPETIRSWSFGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWKC
ACGKYKGIRYKGIVCDRCGVEVTRAKVRRERMGHIELAAPVTHIWYYKGIPSRMGLVLDM
SPRSLEEVIYFAAYVVTDPGNTPMEKKQLLTEQEYRDKKREYGNRFHAEIGAEAIRTLLD
DVDLEKEVTELKAELKSATGQKRTRAIRRLDILEAFLTSGNELAWMVMDAIPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLHAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPWLKLSQMGLPVS
MALELFKPFIMHELVERGLASNVKNAKREIERKDDVVFDVLPDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGKSMRLHPLVCAAYNADFDGDQMAIHVPLSDEAQAESRLLMAAAGHIL
APKDGKPVVAPSQDMVIGNYYLTMEEAGREGEGMIFNDPDEVELAYRDGLVHWHSRIGIP
AAAYPDKPFTDDQQDKIMVTSVGKVVFNKILPKAFTYLNEPTETNLHGYVPDNYFLEPGE
NIHEYIDNAELVKPFKKSFLSDIIAEVYNQYKVTETSELLDRIKDLGNDESTKSGLTVGM
ADIMNLREKPEVVAAAHKKVDTITKQFRRGLITDQERYERVVNVWNDARDEIQDQLMKNF
DPENPIFMMSDSGARGNISNFTQLAGMRGLMASPDGKIMELPITSNFREGMSVLEMFIST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREKDCGTDRGLTVTAIKEGNEMIEPLY
DRILGRNAMKTVKNPQTGAIIVRPNDMIDDKKAQEIVDAGIEAVEIRSAFTCNTAHGVCE
RCYGQNLATGDEVEVGEAVGTVAAQSIGEPGTQLTLRTFHTGGVASNTDITQGLPRVQEI
FEARNPKGKSTISEVTGVVELIEEDPAEGVKEITIQGKADTRKYKVPLTARMRVAEGDTV
RRGEALNEGSIDPKELLKIRDTLSTETYLLTAVQEVYRRQGVEVNDKHAEIMVRQMLRKV
RVMDPGDTDILPGTLIDIDDFKEQNRDAVMTGKVPATARPVLLGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKVDPLIGLKENVIIGKLLPAGTGVHEYEDIEPEELGQATDQEVPA
ASDPTANVDHDDAPE
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atggttgatgtcaacaaatttaagagcatgcaagttggtttagccgctccagagaccatt
cgtagttggtcctttggagaagtgaaaaaaccagaaaccattaactaccggacgctgaaa
cctgaaaaagacggattattcgacgaacggatctttggaccaaccaaggactggaaatgt
gcctgtggcaagtacaaagggatccggtacaagggaattgtctgtgatcggtgtggagta
gaagtgacgcgggctaaggttcggcgtgaacgcatgggtcacatcgaattagctgctccg
gtaacccacatttggtattacaagggaatcccaagtcggatggggctagtgttggacatg
agcccccggtcgctggaagaagtcatttactttgcggcttacgtagtgaccgatcccggc
aacaccccgatggaaaagaaacaactcctgacggaacaagaataccgggacaaaaagcgg
gaatacggcaaccggttccatgctgaaatcggagccgaagccattcggacgttgctcgat
gacgtggacctcgaaaaagaggtcaccgagttaaaggcggaactgaagtccgcaaccggc
caaaaacggacccgcgccattcgccgtttagacattctggaagcctttttgacgtctgga
aacgaactggcgtggatggttatggatgctattcccgtgatgccacctgacttacggccg
atggtacaactcgaagggggtcggtttgcaacctccgatttaaacgacttgtaccggcgg
gtcattaaccggaacaaccggttgaaacgcctgctagatttgcacgcccccggcattatc
gtccaaaacgaaaagcggatgctccaagaagccgttgatgcgttgatcgataacgggcgg
cgtggtcgtccggtcgctggtccaggaaatcggccactgaagtccttgtcgcacctcttg
aaggggaagcaagggcgattccggcaaaacttactgggaaaacgggtcgactactctggt
cgttccgtaatcgacgtgggaccgtggctgaagttaagtcaaatgggactgccagtttcc
atggcactcgaactgttcaaaccattcatcatgcatgaactggtggaacggggcttagct
tccaacgttaagaacgcaaaacgggaaatcgaacgtaaggatgacgttgtctttgacgtt
ctgcctgacgtaattaaagaacaccccgttctcttgaaccgggccccaacgctgcaccgg
ttaggaattcaagcctttgaaccggtgctggtaagtgggaagtcaatgcggttgcatccc
ctagtttgtgccgcttacaacgccgactttgatggagaccagatggccatccacgtgccg
ttatctgacgaagcccaagcagaatcacggctcttgatggcagctgccgggcacattttg
gcacctaaggacggaaaaccagtggtggccccatcccaagatatggtaattgggaactac
tacctgacgatggaagaagccggtcgggaaggtgaaggcatgatcttcaacgacccagac
gaagtggaattggcttaccgcgacggtttggttcactggcacagtcggatcgggattccg
gccgctgcttatccagataaaccctttacggatgaccaacaggataagatcatggtgacg
tccgtcggtaaagtggttttcaacaagattttaccgaaggcctttacctacctgaacgaa
ccaacggaaacgaacttacatggttacgttccggataactacttcttggaacccggcgaa
aacattcacgagtacattgacaatgctgaactggtgaaacccttcaagaagagcttttta
tcagacatcattgccgaagtttacaaccagtacaaggtgacagaaacctctgaattgctg
gaccggatcaaggatctcggaaacgatgaatccacgaagtccgggttgacggtcggaatg
gccgacatcatgaacctgcgtgaaaagcccgaagttgtcgcagctgcgcacaaaaaggtg
gacacgattacgaagcaattccggcggggactgattaccgatcaagaacgctacgaacgg
gttgtgaacgtctggaacgatgcgcgggatgaaatccaagatcaactgatgaagaacttc
gatccagaaaatccaatctttatgatgagcgattcaggagcccggggaaacatctctaac
tttacgcagttagccggaatgcggggcttgatggcttctccggatggaaaaatcatggag
ctgccgattacctcgaacttccgggaaggaatgtccgtgttggaaatgttcatttcaacc
cacggggcccggaaagggatgaccgatacggccttgaagacggccaactcagggtactta
acccggcggttggttgacgtggctcaagacgtcatcattcgggaaaaagattgtgggacc
gaccgtggtttgaccgtaacggccattaaagaggggaacgaaatgattgaacccctctat
gaccggattctcggtcggaatgccatgaagacggtcaaaaacccgcaaacgggagcaata
attgtgcgtccgaacgacatgattgacgacaagaaggcgcaagaaattgttgatgccgga
attgaagccgttgaaattcggtcggccttcacttgtaatactgcccacggggtttgtgaa
cgttgttacgggcaaaacctcgccactggtgatgaggttgaagttggagaagcagtcgga
acggtggctgcccaatcaatcggggaacccggaacgcagttaaccttgcggactttccat
acgggaggggttgcaagtaacactgatattacccaggggctgccccgggttcaagaaatc
tttgaggctcggaatccaaaagggaagtcaaccatcagtgaagtaactggggtggttgaa
ttaatcgaagaggatccggctgaaggggttaaggaaatcacgatccaaggaaaagccgat
accagaaagtacaaggttccattgacagcacggatgcgcgttgctgagggtgacacggtc
cgccggggagaagccttgaacgaaggttcgattgatccaaaggaactgttgaagattcgg
gataccctgtcaacggaaacctacctcctgacggccgtgcaagaagtgtaccggcgtcaa
ggggtggaagtgaacgataagcatgccgaaatcatggtgcggcagatgttacggaaggtg
cgggtcatggatccgggcgacactgacattctgccagggactttgattgacattgatgat
ttcaaggaacaaaaccgggatgccgtgatgactggaaaagtaccagccacggctcgccca
gtgctactaggaatcaccaaggcagcgctcgaaacgaacagtttcctctccgctgcttcc
ttccaagaaaccacgcgggtcttgaccgatgctgccattcggggcaaggtcgatccgttg
attggactgaaagagaacgtgattatcgggaagttgttaccagctggaacgggtgttcat
gaatatgaagacatcgaaccagaagaactggggcaagcaactgaccaagaggttcccgcc
gcttctgatccaacggcgaacgtggatcacgacgacgcacctgaataa
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