Fructilactobacillus ixorae: M8332_05275
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Entry
M8332_05275 CDS
T08281
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fix
Fructilactobacillus ixorae
Pathway
fix03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fix00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M8332_05275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fix03021
]
M8332_05275
03400 DNA repair and recombination proteins [BR:
fix03400
]
M8332_05275
Enzymes [BR:
fix01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M8332_05275
Transcription machinery [BR:
fix03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M8332_05275
DNA repair and recombination proteins [BR:
fix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M8332_05275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
USS93940
UniProt:
A0ABY5C9A2
LinkDB
All DBs
Position
complement(1042116..1045715)
Genome browser
AA seq
1199 aa
AA seq
DB search
MAGNVVKYGKHRTRRSYARIKKVLDLPNLIEVQTDSYNWFLDEGLREMFKDIMPIDDFQG
KLSLDFVDYQLLEPKYTVAEARAHEVNYSAPLHVTLKLTNHETGEIKTQDVFFGDLPLMT
DQGTFIINGAERVIVSQLVRSPGAYYHKELDKNGREIYSATVIPNRGAWMEFATDAKNIS
YIRIDRTRKLPITELVRALGFGSDDEITEIFGSTSDTLNLTLEKDVHKDASDSRVEEALK
DIYERLRPGEPKTAESSRNLLTTRFFDPKRYDMAPVGRYKTNEKLSLKNRLMGAALAETL
ADPDTGEIIANKGDIVEKELMKQLAPYLDRPDFKAYTFTPAAEAVVTDPVTVQIIKVYSN
ADPEKVVPVVGNDNISLDYKHITPADMLAQVNYFFNLQEGLGSVDDIDHLSNRRVRSVGE
LLQNQFRIGLSRMERVVRERMSIQDTATVTPQQLINIRPVVASVKEFFGSSQLSQFMDQT
NPLGELTHKRRLSALGPGGITRDRAGYEVRDVNYTHYGRICPIETPEGPNIGLINSFSGY
ARVNKYGFIESPYRRVDWNTHKVTDKIDYLTAGDEDKYVIAQANSPLNPDGSFRDHEVMA
RDKSEYVEANTDDVDYMDVSPKQVVSVATACIPFLENDDSNRALMGSNMQRQAVPLLNPH
APLVGTGMEYKTAHDSGVAKIAKYPGTVEYVDAREIKIRRDNGTLDTYELTKFMRSNNGM
NYNQTPIVKTGDHVDADEIIADGPAMENGELALGQNPTVAFMTWQGYNFEDAIAISEKLV
KEDAYTSIHIEEYESETRDTKLGPEEMTREIPNVGEDALKDLDENGIVRIGAEVHDGDIL
VGKVTPKGMTELSSEERLLHAIFGEKSREVRDTSLRVPHGADGVVQDVKVFSRENGDELQ
PGVNKMVRVYIAQKRKLQVGDKMAGKHGNKGTVSIVVPEEDMPYMPDGTPVDILLSPMGV
PSRMNIGQVLEMHLGMAAKKLGIHVSSPVFDGATSADVWDAVREAGMSHDGKTILYDGRT
GEPFDKPVAVGVMGYLKLNHMSEDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAHTLQEILTYKSDDVVGRVKTYEAIVKGDPIPKPGVPESFRVLVKELQALGLDM
KVLGANHQPIDLRDMDEDDEVVNVNALNKVAHEQAAKQTEAEPEASHAASPDDAEQQDQ
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggccggtaacgttgttaagtacgggaaacatagaacccggcggagttacgccagaatc
aagaaggtcttagacctccccaacttgattgaggtgcaaaccgattcttacaactggttc
ttagacgaagggctccgtgagatgtttaaagacatcatgccgattgacgacttccaaggg
aagttatcgttagacttcgttgattaccaactgttggaaccgaagtacacggttgcggaa
gcacgggctcacgaagttaactactccgctcccctgcacgtgaccctcaaactaactaat
catgaaaccggggaaatcaagacccaagacgttttctttggggacttgcccctgatgact
gaccagggaaccttcattattaatggagcagaacgagtaattgtttcgcaattagttcgc
tctcctggggcttactaccacaaggaactggataaaaacggtcgtgaaatttacagtgcc
acggtgattcctaaccggggggcttggatggaatttgcgacggatgccaaaaacatttcg
tacatccggattgaccggacgcgaaagctaccgatcactgaattagtgcgggcgctcggg
tttggttctgatgacgaaattaccgaaatctttggttccacgagtgatactttgaaccta
accttggaaaaggacgttcacaaggatgccagcgattcccgggttgaagaagcactgaag
gacatctacgaacggttgcgtcccggggaaccgaagacggctgaatcctcgcggaacctg
ttaacgactcgtttctttgatcctaagcggtatgacatggcacccgtgggtcggtacaag
accaacgaaaagttgagcctaaagaaccgcttgatgggagctgcgttagcagaaaccctc
gcggatccagatacgggtgaaattatcgccaacaagggtgacatcgtggaaaaggaactc
atgaagcaactggctccatacttggatcgccctgacttcaaggcctacacgtttaccccg
gctgccgaagcagttgtaacggaccccgtaacggttcaaatcattaaggtttattccaat
gcggatcctgaaaaagtggttcccgtagttggcaatgacaacattagcttggattacaag
cacattaccccagctgacatgctagcccaggtgaactacttctttaacctgcaagaaggg
ctcggctcagttgatgacatcgaccacttgagcaaccgacgagttcgttcggtgggcgaa
ttgttgcaaaatcaattccggatcgggttatcccgaatggaacgggtggtccgggaacgg
atgtcaattcaagatacggccacggtaacgccccaacaactgattaacattcggccggtg
gtagcctctgtaaaggaattctttggttcttcgcaactatctcagttcatggaccaaacg
aacccgttaggggaattgacccataaacggcggctttccgccctagggccggggggaatc
acccgggaccgggctgggtacgaagttcgagacgttaactatacccactacggccggatt
tgtccgattgaaacgcccgaaggtccaaacattgggttgattaactccttctctggatac
gcgcgggttaataagtacggctttattgaatcaccataccggcgggtggattggaatacc
cacaaggtaaccgacaagattgattacctgacggccggcgacgaagataaatacgtgatt
gcccaggccaactcgccgttgaatcccgacggttccttccgcgatcacgaagtaatggca
cgggataagtccgaatacgtggaagccaacaccgatgacgttgactacatggacgtttcg
cctaagcaagtggtttccgtggctacggcatgtattccgttcttggaaaacgatgactcc
aaccgggccctgatgggttctaacatgcaacggcaagcggttccattgttaaatccacac
gctcctctagtgggaacgggaatggaatacaagacagcccatgactcgggagtcgctaag
attgcgaagtacccgggaacggtggaatacgttgatgcacgtgaaatcaagattcggcgc
gacaacggcacgttagatacctacgaactcacaaagttcatgcgttctaacaacggaatg
aactacaaccaaacgccaatcgtcaaaactggtgatcacgttgatgctgacgaaatcatc
gccgacggaccagccatggaaaatggcgaattggccttgggtcaaaacccaacggtggcc
ttcatgacctggcagggttacaacttcgaagatgccatcgcgattagcgaaaaactcgtt
aaagaagatgcttacacttcgattcacattgaagagtacgaatcagaaacgcgtgacacc
aagttaggacctgaggaaatgacccgcgaaattccgaacgtgggcgaggacgccttaaag
gacctcgacgaaaatgggattgtccggattggggcagaagttcatgacggagacatcctg
gtcggaaaggtgactccaaagggaatgacggaattatcttctgaagaacggctcttacac
gccatcttcggagaaaaatcacgggaagttcgtgatacttccttgcgggtgccgcacggt
gccgacggggtggttcaagacgtaaaggtcttctcgcgtgaaaacggggacgaactccaa
ccgggcgttaacaagatggtccgggtttacattgcccaaaaacggaagttgcaagtcgga
gacaagatggccggtaagcacggaaacaaggggacggtgtccatcgtggttccagaagaa
gacatgccatacatgccggatggaactccagttgacattctactgagtcccatgggagtt
ccatcgcgaatgaacattggtcaggtgctagaaatgcacctcggaatggcagcgaagaaa
ctgggaattcacgtttcctcaccagtctttgatggggcaaccagtgccgacgtttgggac
gcggttcgcgaagccggcatgtcccacgacggtaagacgatcctgtacgacggtcggacg
ggagaaccatttgataagccagtcgccgtgggggtcatgggttacctgaagctgaaccat
atgtcagaagacaagattcacgctcgttccattggaccgtactccttggttacgcaacaa
ccactgggtggaaaagctcagtttgggggtcagcggttcggtgaaatggaagtttgggcc
ctggaagcatacggggctgcgcacaccctccaagaaattttgacttacaagtccgatgac
gtggtgggccgggttaaaacctacgaagccatcgtgaagggggatccaattcccaaaccc
ggagttccggaatccttccgggtacttgtcaaagaattgcaagcccttggattagacatg
aaggtgttaggagctaaccaccaaccaatcgatctccgtgatatggatgaagacgatgaa
gttgtcaacgtaaacgctttaaacaaggtggcgcacgaacaagctgccaaacaaaccgaa
gccgaaccagaagccagtcacgccgctagccctgatgacgctgagcaacaagatcagtaa
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