Candidatus Filomicrobium marinum Y: BN1229_v1_0024
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Entry
BN1229_v1_0024 CDS
T03857
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fiy
Candidatus Filomicrobium marinum Y
Pathway
fiy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fiy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN1229_v1_0024 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fiy03019
]
BN1229_v1_0024 (rne)
03009 Ribosome biogenesis [BR:
fiy03009
]
BN1229_v1_0024 (rne)
Enzymes [BR:
fiy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BN1229_v1_0024 (rne)
Messenger RNA biogenesis [BR:
fiy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN1229_v1_0024 (rne)
Ribosome biogenesis [BR:
fiy03009
]
Prokaryotic type
rRNA processing factors
BN1229_v1_0024 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
CPR14684
UniProt:
A0A0D6JAI2
LinkDB
All DBs
Position
1:complement(23742..26885)
Genome browser
AA seq
1047 aa
AA seq
DB search
MSENKMLIDAAHPEETRVVVLRGGRVEEFDYESAARKQLRGNIYLAKVTRVEPALQAAFV
DYGGNRHGFLAFNEIHPDYYQIPIADRIALLEEEAAIEAEEEAEADARAERMAARRARRQ
NATPSKDSDNDDDNNTNDESDEAEDVHAASSDDHDWDNDGEDGDNEASVADDADAVTADE
TSEEAVQAESVGSKDDPVDPPSDEDSGQQNGPKTIAINMARDESLSEELATEGDSESSDR
TEVLVDADVAEALTATVSEARPNTEVDASPAAPEEAEETAPADDDTDGDTTTASADTDAI
ENVGDSEDALEELPSRPRRSRRSYKIQEVIKRRQVLLIQVVKEERGNKGAALTTYLSLAG
RYTVLMPNTARGGGISRKITNPQDRKRLKAIATELEVPEGMGLIIRTAGAARTKQEIRRD
FEYLLRLWESVRELTLQSTAPSLVYEEGDLIKRSIRDLYNKEIDEVVVAGEDAHREAKSF
MRMLMPSHAKNVTLYKDAEPLFTRYAIERQLNAMFSPFVTLRSGGYLVINQTEALVAVDV
NSGRSTREFSIEETALHTNLEAADEIARHLKLRDLAGLIVIDFIDMEEKRNNRAVERRLK
EALRLDRARIQVGRISPFGLLEMSRQRLRTGVLEGSTSQCPHCQGTGIIRSTESIALAVL
RALEDAVMNKSRGSLIANTTAEVALYILNNKRDFIIDMEARHGFPILVQASEKMAGANFT
VEKGSAPAQAPTPRRADRSAVKMDWNFDEAEVVTEASDNFDNEDGNDEATGSGEEDNGRR
KRRRRRRTRRGGSERLANAADTSASENLVEASDDMDEDEQDTSTSDDGEASDDTTIESAD
GSSERPSRRRRRGRRGGRRNRERNRTTAEGEGEHSDGTQDAASEIPGLGPQPSIIEISTE
PRAEAEPTPVREKAEPSSETVMRVTEPASETVEAVIPPAELQQSVTEEVTTETQNEPAAS
VQAPETTPPVEAEAPVATKDKPVPVVAAEEPRAPESTPAPNGGLRLQRVIMGPDRSVETG
LDATLEPSEDKPARKGWWQRKLLGSDS
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaacaagatgcttattgatgccgcgcacccggaagagacccgggtcgtggtt
cttcgcggaggtcgcgtagaggaattcgactacgaatcagcggctcgcaaacaactgcgc
ggcaacatttacctcgccaaggtaacgcgcgttgagccggcgctgcaggctgcattcgtt
gactatggcggcaatcgccacggcttccttgcctttaacgaaatccatccggactactat
caaattccgattgctgaccgcattgctctcctggaagaggaagcagcaatagaagcggaa
gaagaagctgaagcagacgcgcgcgccgaacgcatggcagcacgccgcgcccgccgccag
aatgcgacgccctcaaaggactcggataacgacgacgacaacaatacgaacgacgagtcc
gacgaagcggaagacgtccatgccgcgtcgtcggacgaccatgattgggacaacgatggc
gaggacggcgacaacgaagcttccgtcgccgatgatgctgacgctgtcactgcggatgaa
acctcggaagaggccgtccaagcagagagtgtcggaagcaaagacgacccggtagaccct
ccgtcggatgaagactccgggcaacaaaatggtccgaaaacgatcgccattaacatggcg
cgcgacgaaagcctctcggaagagttggccacagaaggcgacagcgaaagctccgacaga
acggaagttctggtggacgctgatgttgcagaggctctcaccgccaccgtctcagaggcg
cgtccgaacacagaggtagacgcaagccctgctgctcccgaagaagccgaagaaacggca
cctgcggacgacgacaccgacggagatacgacaaccgcatccgcagacacggacgcaatc
gaaaacgtcggcgacagcgaagatgccttggaggaactgccctccaggccgcggcgctcg
cgccgtagctacaaaatccaggaagttattaagcgtcgtcaggtcctgctgatccaggtc
gtgaaggaagaacgcggcaacaagggcgccgccctgacgacctacttgtcacttgccggc
cgctacaccgtgttgatgccgaataccgcacggggcggcggtatctcacgcaagatcacc
aatccccaagaccgcaagcggctgaaggccatcgccacggagctcgaagttccggaagga
atgggcctgatcatccgcacggccggtgccgcacgtacgaagcaggaaatccggcgtgac
ttcgaatacctgctgcgtctgtgggaaagcgtgcgcgaactcacactgcaatcaacagct
ccaagcctcgtttacgaagaaggcgacctgatcaaacgttcgatccgcgatctctacaat
aaggagatcgacgaggtcgtcgtggcaggtgaagatgcgcaccgtgaagcgaaaagcttc
atgcgcatgctgatgccgagccacgccaagaacgttacgctctataaggacgccgagcct
ctcttcacacgctatgctatcgaacgtcagttgaacgccatgttcagcccgttcgtcaca
ttgcgttccggcggttatctcgtcatcaaccagaccgaagcgttggttgctgtcgacgtg
aactcgggccgctccacccgcgagttctcgattgaagaaacggcgctccataccaacttg
gaagcagccgatgaaatcgcccgccaccttaagctgcgggacttggccggattgatcgtt
atcgacttcatcgacatggaggagaagcgcaacaaccgggccgtggaacgtcggctcaaa
gaggcgttgaggctggaccgcgcccgcattcaggtcggccgtatcagcccgttcggcttg
ctggaaatgtcccgtcagcgcctgcgcacaggtgttctcgaaggttccacgtcgcaatgc
ccgcactgccaaggcaccggcatcatccgctcgactgaatcgattgcactcgctgttctg
cgcgccctcgaagacgctgtgatgaacaaatcacgcggatcgttgatcgcgaacaccacg
gccgaagtcgccttgtacattctcaacaacaagcgcgacttcatcatcgacatggaagcg
cgccacggcttcccaatcctcgttcaggcttcggaaaaaatggccggcgccaacttcacg
gtcgagaaaggctccgcccccgcgcaggccccgaccccacggcgcgcggatcgcagcgcg
gtcaagatggattggaacttcgacgaggccgaggtcgtcacggaagcttctgacaatttc
gacaatgaagatgggaacgacgaagcaaccggttcgggcgaagaggacaacggccggcgc
aaacggcggcgtcggcgccggacgcgccgcggtggcagcgaacgtttggccaacgcagcc
gacacaagcgccagcgagaacctcgtcgaagcatcagacgatatggatgaagacgagcag
gatacgtccacatcagacgatggcgaagccagcgatgacaccacaatagagtctgctgac
gggtcctcggaacgcccctcacgtcgtcgtcgtcgcgggcgccgcggtggccgccgcaac
cgtgaacgcaaccggacaacggcagaaggcgaaggcgaacactcagacggtacacaagat
gccgccagcgaaattcccggcctcggcccccaaccctcgattatcgaaatctcgaccgaa
ccgcgtgcagaggctgaacccacaccggtgcgtgagaaggccgagccatcatcagaaacc
gtcatgagggtgacggagcccgcatcggaaactgttgaagccgtaataccaccggctgaa
ctacagcaatccgttacggaagaagtcaccaccgaaacgcaaaacgaacctgccgcgtca
gtccaggcccccgaaaccacgccgccagtcgaggccgaagctccggttgccacgaaggat
aaaccggttcccgtcgtcgctgctgaagaacctagagcccctgaatcaacaccggctccg
aatggagggctgcgtctgcagcgtgtaattatggggccagaccgttccgtagaaacaggc
ctcgatgcgaccttggagccatccgaagataagcccgcgcgcaaaggctggtggcaacgt
aaacttctgggaagcgacagctaa
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integrated database retrieval system
