Candidatus Filomicrobium marinum Y: BN1229_v1_0352
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Entry
BN1229_v1_0352 CDS
T03857
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
fiy
Candidatus Filomicrobium marinum Y
Brite
KEGG Orthology (KO) [BR:
fiy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fiy03032
]
BN1229_v1_0352 (topA)
03400 DNA repair and recombination proteins [BR:
fiy03400
]
BN1229_v1_0352 (topA)
Enzymes [BR:
fiy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BN1229_v1_0352 (topA)
DNA replication proteins [BR:
fiy03032
]
Prokaryotic type
DNA Topoisomerases
BN1229_v1_0352 (topA)
DNA repair and recombination proteins [BR:
fiy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BN1229_v1_0352 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
EH_Signature
Motif
Other DBs
NCBI-ProteinID:
CPR15424
UniProt:
A0A0D6JAB5
LinkDB
All DBs
Position
1:complement(340349..343120)
Genome browser
AA seq
923 aa
AA seq
DB search
MNVVIVESAAKAKTINKYLGPKFKVIASFGHVRDLPSKDGSVDPDADFAMNWDIVDPKSN
KILKEITDAVKGADKLILATDPDREGEAISWHILQVLEKRRALKKDMHVERVAFNAVTKQ
AIQQALAQPRQIDEPLVSAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLIC
NREAEIEAFRSDEYWTIEADLLTGKKEEFSARLAAISGTTLKKLDIKEEAQATAIKAAIE
GGRFKVVSVEKKATRRNPYAPFTTSTLQMDASRKLGFSAKQTMQIAQRLYEGVDLGEAGP
VGLITYMRTDGVQIVPEAVATIRREVEGDFGKRYLPPFIREYKSKAKNAQEAHEAIRPTD
VSRKPARVSRYLDKDQARLYDLIWKRAVASQMASAELEQTAAQIEVAGRDGKTYTLRATG
SVIVFDGFLKLYEEGRDERQHATKGKDDTSEEDDTARLPALAEGDPLTDRKIDANQHFTQ
PPPRFTEATLVKRMEELGIGRPSTYASTLAVLQERDYVTTDKKRLIPQDKGRLVTAFLES
FFKRYVEYDFTADLEEKLDLISDDKLEWKDVLRDFWKDFTGAVNDIKDLRVSEVLDALNE
ILGPHVFPPREDGSDPRQCPACGTGQLSLKISGKYGAFIGCGNYPECRYTRQLSQTDDGA
GEMALPDGKVLGFDPESGDSISLRTGRFGPYLQLGEGADGEKPKRSSIPKGVDAGSIDLE
RAIQLLSLPREVGLHPETGNPITAGLGRYGPFVLHDGTYANLESMEDVFSIGLNRAVTLI
AEKLAGGGKGRFQRAKPAVLKELGEHPSEGGKVEVLSGRYGPYVSHNKINATLPKGKEPE
SITLEEAVTLLAEKAAKGGKAKKPAKAKAAKKTADAPKKAAAKKPAVTKKPATAAKTKAA
AKKSKAPAKAKSKKAASTASGDA
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtcgtcatcgtcgaatccgccgccaaggcgaagaccatcaacaagtaccttggg
cccaagttcaaggtaatcgcctcgtttggccacgtgcgcgacctgccctcgaaagatgga
tctgtcgaccccgacgctgactttgcgatgaactgggatatcgtcgaccccaagtccaac
aagatcctcaaagaaattacagacgccgttaagggtgccgacaagctgatcctcgcaacc
gaccctgatcgcgaaggcgaagcgatctcgtggcacatcctgcaagttctcgaaaagcgc
cgcgccttgaaaaaggacatgcatgtcgagcgcgtggcgttcaacgcggtcacgaaacaa
gccatccagcaagcactcgcgcagccgcgacagatcgacgagccgcttgtctcagcttac
ctcgcccgccgcgccctcgactacctggtcggctttacactgtctcccgtgttgtggcgc
aaactcccgggcgctcgctccgccggacgcgttcagtccgtagcattgcgcctgatctgc
aaccgggaagccgagatcgaagcctttcgcagcgacgaatattggacgattgaagctgat
cttctgaccggcaaaaaggaagaattcagcgcacgtcttgcggcgataagcggtacgacc
cttaagaaactcgacatcaaagaagaagcgcaagctacagccatcaaggcggccatcgaa
ggtggtcgcttcaaggtcgtatccgtagaaaagaaggccactcgccggaacccctacgcg
cccttcacaacctcaacactgcagatggatgcgtcgcgtaagctcggcttttccgccaag
caaacaatgcaaatcgcgcagcgcctctatgaaggggtcgatcttggcgaagctggcccc
gtcggcctcattacttatatgcgaaccgatggcgtccagatcgtccccgaagccgtcgca
accatccggcgcgaagtcgagggtgatttcggcaagcgttatctccccccatttattcgt
gaatataaatccaaagcgaagaacgcccaggaagctcacgaagcaatccgtcccacggat
gtctcccgcaaacctgcgcgggtctcccgctatttggataaggaccaggcacgcctttac
gatcttatctggaagcgcgccgttgccagtcagatggcttcagcagaactggaacagacg
gccgcccagatcgaagtagctggccgcgacggcaaaacctacacgcttcgcgccacgggt
tctgtgatcgtcttcgacggcttcctcaagctctatgaggaaggtcgggacgaacgccag
catgcgaccaagggcaaagatgatacgagtgaggaagacgatacggcccgcttgccggct
cttgccgaaggcgatccgctgaccgaccgcaagatcgacgccaatcagcacttcactcag
ccgccaccgcgcttcaccgaagcaacgctcgtcaagcgcatggaagaactcggcatcggc
cgcccctcgacctatgcctcgaccctcgccgtcctgcaggaacgcgactacgtcaccacg
gacaagaaacgcctcatcccgcaagacaagggccgtctcgtcaccgcgtttcttgagagc
ttcttcaagcgttacgtcgagtatgatttcacggccgacctggaagagaagctcgatctc
atttccgacgacaagctcgaatggaaagacgtcttgcgcgatttctggaaggattttact
ggcgccgtcaacgacatcaaggacctgcgcgtctccgaagtcctcgatgcgctgaacgaa
attctcggcccccacgtgttcccgcctcgtgaggacggcagcgacccacgtcagtgtcct
gcgtgcggcactggccaattgagtctcaagatctccggcaagtatggtgccttcatcggt
tgcggcaactatccggaatgccgttacacgcggcagctgtcccagacagacgatggcgct
ggagaaatggctctgccagacggcaaagtcctcggtttcgatccggaatccggtgactcg
atttctttgcgcacgggccgtttcggaccctacctccagcttggcgaaggcgcggacggt
gagaaacccaagcggtccagcatccccaaaggggtcgacgccggctcgatcgaccttgag
cgtgcgatccagcttctatctttgccacgtgaagttgggctccatccggaaaccggcaac
ccgattacggctgggctcggacgctatgggccgttcgtgctgcacgatggaacctacgca
aacctggaatctatggaggacgtattctccatcgggctcaaccgcgccgtaactttgatc
gccgaaaagcttgcgggaggcggaaagggtcgcttccagcgcgcaaaacctgcagtcctg
aaagagctcggcgaacacccgagcgaaggcggcaaggtcgaagtgctgtcgggtcgctac
ggcccttacgtcagccacaacaaaatcaacgccaccttgcccaagggcaaagaacctgaa
agcattacgcttgaagaggctgtaaccctactagcggaaaaagccgccaagggaggcaaa
gccaaaaagcctgccaaagcgaaagccgcaaagaaaacggcagacgccccgaagaaagcc
gcagccaaaaagcccgccgtcacgaagaaaccagcaaccgcagcaaagaccaaagccgct
gcgaaaaagtcgaaggcgccggctaaagccaaatctaagaaagccgcgtcgacggcaagc
ggcgacgcctga
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