Candidatus Filomicrobium marinum Y: BN1229_v1_0461
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Entry
BN1229_v1_0461 CDS
T03857
Symbol
rpoA
Name
(GenBank) RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
fiy
Candidatus Filomicrobium marinum Y
Pathway
fiy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fiy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN1229_v1_0461 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fiy03021
]
BN1229_v1_0461 (rpoA)
03400 DNA repair and recombination proteins [BR:
fiy03400
]
BN1229_v1_0461 (rpoA)
Enzymes [BR:
fiy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN1229_v1_0461 (rpoA)
Transcription machinery [BR:
fiy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN1229_v1_0461 (rpoA)
DNA repair and recombination proteins [BR:
fiy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN1229_v1_0461 (rpoA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
IDH
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
CPR15684
UniProt:
A0A0D6JBF3
LinkDB
All DBs
Position
1:436137..437165
Genome browser
AA seq
342 aa
AA seq
DB search
MTTQLLQKNWQNLIKPAKLDVVAGRDRTRVATIVAEPLERGFGMTLGNALRRVLLSSLQG
AAIRTVQIDGVLHEFSSIPGVREDVTNIILNIKEISLKVHSEGPKRMVLKKDGPGPARAG
DIEVSSEVEILNPEHIICHLDQGASVRMELTADIGKGYVAAERNRPEDAPIGLIPVDSLY
SPVKKVSYKVEHTREGQILDYDKLTMTVETDGSISPEDAVALAARILQDQLAVFINFEEP
KKPQEEQRHPELSFNAALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNF
GRKSLNEIKEVLASMGLHLGMEVPNWPPDNIDELAKRFEDQY
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
gtgaccacccaattgttgcagaagaattggcaaaacttaatcaagcccgcaaagctcgat
gttgtcgccggacgtgatcgcacgcgtgttgcgacgatcgttgccgaacctttggagcgc
ggcttcggcatgacgctgggcaacgcgctacggcgcgtgctgttgtcctcgctgcagggt
gcagccatccggactgtgcagatcgacggcgtgctgcacgagttctcgtcgatccccggc
gttcgtgaggacgtgacgaatatcattctgaacatcaaggaaatctcgctgaaggtccac
tctgagggtccaaagcggatggttttgaagaaggacggcccaggcccggcacgcgctggt
gatatcgaggtcagctctgaggtcgagatcctcaaccccgaacatattatctgccacctt
gaccaaggcgcttcggtgcgcatggagctaacggctgacatcggcaagggctacgtcgcg
gctgagcgcaatcggccggaagacgcgccgatcggtctgatcccggtcgacagcctctac
agcccggtgaagaaggtctcttacaaagtcgagcatacccgcgaaggccagatcctcgac
tacgataagttgacgatgacggttgagaccgatggctcgatttctccagaagatgcggtc
gcacttgccgcgcgcatcctgcaggatcagttggctgtcttcatcaacttcgaagagccg
aagaagccacaggaagagcagcgtcatccggagctgtcgttcaatgcggcgcttctcaag
aaggtggacgagctggagctcagcgtgcgttctgccaactgcttgaagaacgacaacatc
gtctacatcggcgatctcattcagaagactgaagcggaaatgctgcgcacgccgaacttc
ggccgcaagtcgctcaacgagatcaaagaagtgctggcctccatgggcctgcatctcggt
atggaagtgccgaactggccgccggataacatcgacgagctggcaaagcgcttcgaggat
caatactaa
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