KEGG   Candidatus Filomicrobium marinum Y: BN1229_v1_1062
Entry
BN1229_v1_1062    CDS       T03857                                 
Symbol
rho
Name
(GenBank) transcription termination factor
  KO
K03628  transcription termination factor Rho
Organism
fiy  Candidatus Filomicrobium marinum Y
Pathway
fiy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fiy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BN1229_v1_1062 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fiy03021]
    BN1229_v1_1062 (rho)
   03019 Messenger RNA biogenesis [BR:fiy03019]
    BN1229_v1_1062 (rho)
Transcription machinery [BR:fiy03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BN1229_v1_1062 (rho)
Messenger RNA biogenesis [BR:fiy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BN1229_v1_1062 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB NACHT AAA_25 AAA_22 S1CSD-TOTE-2 AAA Fungal_virus_P2_C Spore_III_AA
Other DBs
NCBI-ProteinID: CPR17009
UniProt: A0A0D6JCC1
LinkDB
Position
1:complement(983154..984419)
AA seq 421 aa
MEQMKLEDLKLKSPPELLSFAEEMGVENASTMRKQELMFATLKQLAAQDIEIMGTGVVEV
LPDGFGFLRSPDANYLPGPDDIYISPSQIRRFALRTGDTVEGQIRSPKEGERYFALLKVA
KINFEEPEATKHKIHFDNLTPLYPTSWLKMEIEDPTIKDLSARVIDIVSPLGKGQRALIV
APPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPPS
RHVQVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDSNALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKVSDKRVFPA
IDVARSGTRKEDLLIAKDQLKKVYVLRRILNPMGTMDAIEFLIDKLKQTKTNGDFFNSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggaacaaatgaaacttgaggatctgaagctcaagtcaccaccggaactgttaagtttc
gccgaagaaatgggcgttgaaaacgccagcaccatgcgcaagcaggagctgatgttcgcg
acgctgaagcagcttgcggcccaagacatcgagatcatggggacgggggttgtggaggtt
cttccggatggctttggcttcctccgctcaccagacgcgaactatctgcctggtcccgat
gacatctatatatctccgtctcagatccggcgctttgcgctgcgaaccggcgatacagtc
gaaggccagatccgcagtccgaaggaaggggagcgctactttgctcttctgaaagttgcg
aagatcaattttgaagagcctgaagcgaccaaacataagatccacttcgataacctgacg
cctctttatccaacgtcctggttgaagatggaaatcgaagatccgacgattaaggatctt
tcggcacgtgtgatcgatatcgtctcgcccctcggtaagggccagcgcgctcttattgta
gcgccgcctcgtaccggtaagacggttctgctgcagaacatcgcgcattcgatcaccacc
aatcatcccgaatgctatctgatcgttttgttgatcgacgagcgtccggaagaagtcacg
gacatgcagcgctctgtgaaaggtgaggttatttcctcgaccttcgatgagccgccgtca
cggcacgtccaagtctctgaaatggttattgaaaaggctaaacgtctcgttgagcataag
cgggacgtggtgattcttctggactccatcacccgcctgggccgcgcctataacacggtc
gttccttcatcgggcaaggtgctgaccggcggcgtcgattctaacgcgctgcaacgtccg
aagcggttcttcggtgccgcccgtaatatcgaagagggcggatcgcttacgattattgcg
acagcgctgatcgataccggttcgcgcatggacgaagttatcttcgaagaattcaagggc
acaggtaactcggaaatcattctcgaccgcaaggtttccgacaaacgtgtcttccctgcg
atcgacgttgctcgctccggtacgcgtaaggaagatctcctcatcgcgaaggatcagctc
aaaaaggtctacgtcctgcgtcgtatcctcaaccccatgggtaccatggatgcgatcgag
ttccttatcgataaactcaagcagacgaagaccaatggtgacttcttcaattctatgaac
acttga

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