Candidatus Filomicrobium marinum Y: BN1229_v1_1492
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Entry
BN1229_v1_1492 CDS
T03857
Symbol
sbcC
Name
(GenBank) SbcC exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
fiy
Candidatus Filomicrobium marinum Y
Brite
KEGG Orthology (KO) [BR:
fiy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fiy03400
]
BN1229_v1_1492 (sbcC)
DNA repair and recombination proteins [BR:
fiy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BN1229_v1_1492 (sbcC)
Archaeal homologous recombinant proteins
BN1229_v1_1492 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
nSTAND3
EAD9
ABC_tran
AAA_21
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CPR17948
UniProt:
A0A0D6JDG0
LinkDB
All DBs
Position
1:complement(1425470..1429261)
Genome browser
AA seq
1263 aa
AA seq
DB search
MRILAIRGANLASLADEFEIDLRAEPLASAGLFAITGDTGAGKSTILDALCLALYGQFPR
VAIDKLESVRDPSGRDITAKDARAILRRGAAQGYAEVDFLGQDGKQYRARWEVRRARGKA
DGNLQNAERRLDSLEDGSSIATGQKDVSQAVEACTELTFAQFRRTVLLAQGEFDAFLLAA
ENERAELLEKITGTEIYGRISEQVNSGTKERANETKALEQRRADIGLMEEDVRTKLESEL
AERSALSESQSVQLKDLTERLKHAERLKDARAQAYNAETGLAAAKQRLDEARDDIARLER
LDAAEPLRAKAEAERLSERKLAEARRHAELCEVAVRQSEQNAASAARTLKEASEASTKAD
ADVEKFTPLWREAEQADSQIANAASELEAAQAAVAQAQRQADACASDHEKIEVQRSGLNE
QLAQTLNELETRSTHALLADRLEDITSRIDDRAELRRREAVAKKELFSATEEDARLQPLI
AAAEEEVAAYASRRSQISAQLNELREALSQIDETSLSEHDARLRDGLELLRQAREIARQH
SDAAATVSEADVLRLAQEKALAEASDMIRQAQAQHADWLARRSEVSGLFELAEKTQSQHA
VALRSALITGQPCPVCGGLDHPYSELGHPEGEMVAQMRARRAELDQAIAATAKDITTWQG
AEERARAQCEVAARRGEDATARCLDAQNKFEALAPQLSQFCVAENLPLPIGPGIDAKAAS
ALDGLKADAEAIQRGLREPLAQAVSLRGEADALQKTLDEISEDSERVAAQIQKDRDAKAS
VRAKCGQLETQLASLAEQLASIARELTPYLSTAGLALDDLDRDSLAAQQHVADLATSYAK
LRDARASLDAEQQKLEMSQREIHLGWEKAKASLGSSLLAQSQREQRLQEAKTARASMLGG
EATDTHRARFTQAAKEAQVALSAAQAAHSEADKKLELSKALLDGALRAIDASVQDFATAQ
EVFANAISVAAMNRDEIYALLAIPQEERELLRSQINALQTKLTEATIALTHRRQEVERLQ
GEREEETDLVALTEAVTTLNAEIEDIRNRVAAIQAELKQDNQARASAADIGRQLEAAREE
LEIWRRVDDAIGSADGNKFRRFAQGVTLDQLVQLANVQISELNPRYQLARATTSDLALHV
IDRDMGDEVRSLRSLSGGERFLVSLGLALALSGLEGRQSFVDTLFIDEGFGALDAETLDM
AIDALETLQGHGRKVGVITHVAAMVDRIAVQIRVEKRGGGRGVVRVVDAGFNDASAFAVF
AEA
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgcgtattctggccatccgcggcgcgaacctcgccagccttgcagacgagttcgagatt
gaccttagggcagagccactcgcgagcgcaggtctctttgcgatcaccggtgataccggg
gccggcaaatcgacgatcctcgatgcgctgtgtctggcgctctatgggcagtttccgcgt
gtcgcgatcgacaaactcgagtccgtcagggatcccagcggcagagacataaccgcgaaa
gatgcacgcgcgatcctccgtcgcggcgccgcccaaggttatgccgaggtcgattttctt
ggacaggatggcaagcaataccgcgcgcgatgggaagtccgacgcgcacgtggaaaagcg
gatggcaatctgcagaacgccgaacgcaggcttgattccctcgaagacggcagctcgatt
gcgacggggcagaaggacgtttcccaagccgtcgaggcgtgtaccgaactcacgtttgcg
cagttccggcgcacggttctgcttgcgcagggtgagttcgacgcgttcctgctcgctgcc
gaaaacgagcgcgcggagcttctcgagaaaattaccgggaccgagatttacgggcgaatc
tcggaacaggtgaactccggcacgaaagaaagggccaacgaaacgaaggctctcgaacaa
agacgtgccgacatcggcttgatggaagaggacgtacgcacaaagctggaaagcgaactc
gcggaacgtagcgctttaagcgagagccaaagtgtccaactgaaggacctcaccgagcgt
ctaaagcatgctgagcggctgaaggatgcgcgcgcacaagcgtacaacgccgaaaccgga
cttgccgcagcgaaacagcgtttggacgaagcccgggacgatattgcgcggctcgaacgc
ctcgatgcggccgaaccattgcgagctaaggccgaagcggagcggttgtccgaacgcaag
ttggccgaggctcggcgtcacgccgaactttgcgaagtggcggtacggcaatctgagcaa
aatgcagcatctgctgcgcgcacactcaaagaggcgtccgaagcctccacaaaggctgat
gcagacgtcgaaaaattcacacctctttggcgtgaagccgagcaagctgatagccaaatc
gctaacgctgcaagcgagcttgaagctgcgcaggcggcggtcgcgcaggcccaacggcag
gccgatgcctgcgcttcggatcacgagaagatcgaggttcagcgttcagggctcaacgag
caacttgcgcagacgctgaatgagctggagacgcgttcgacccatgcgttgctggcggac
cggctggaagatatcacgtcacgtattgatgaccgcgccgaactccggcggcgggaagcc
gttgcaaaaaaagagctgttttcggctacagaggaagatgcgcgcctgcagcccttgatt
gcggcggcggaggaggaagtcgcggcatacgccagccgacgcagccagatttccgctcaa
ttgaatgagctgcgcgaggctctgtcccagatcgatgagacgtctctctccgaacacgat
gcgcggctgcgcgatggactcgaacttctccggcaagccagagaaatcgcgcgccaacac
agcgatgcggcggcgacggtttctgaggcggacgtgctgcggttggcgcaagaaaaggcg
ctcgcagaagcctctgacatgatccgacaggcgcaagcacaacatgccgactggctggcc
cggcgcagcgaggtcagcggcctgttcgagttggccgagaaaacccaatcgcagcacgca
gtagccttgcggagcgccctcattaccgggcagccctgtcccgtttgtggcggcctggac
cacccctattccgaactcggtcatcccgaaggtgagatggtggctcagatgcgtgcgcgg
cgtgctgagctcgatcaagccatcgccgcgacagccaaagatataaccacctggcaaggc
gcggaggagcgcgcgcgcgctcagtgtgaggtcgcagcgcgacgtggtgaagacgcaacg
gccagatgcttagacgcgcagaacaagttcgaagcgctggctcctcaactgagccagttt
tgcgtggccgagaacctgccgcttccaatcggtcccggaatcgatgcaaaggcggcatcg
gcgctcgacggtttgaaagctgatgctgaagccatccaacgcggtctacgagagcccctc
gcgcaggcggtttctttgcgtggtgaggctgatgctttgcagaaaacgcttgatgagatc
tcagaagattcagaaagagttgccgctcaaatccagaaagacagagatgctaaggccagc
gttcgggcaaagtgcggacagctggaaacgcaacttgcaagtctggccgaacaactcgcg
tcaatcgctcgggaactcactccctatcttagcactgccggcttggcgctagacgatctc
gaccgcgattccttagctgcacagcagcacgtcgcagaccttgcgacctcatacgccaag
ctccgggatgcgcgcgcatctcttgacgctgagcagcagaagcttgagatgtcgcaaagg
gaaatccacctaggatgggagaaggccaaggcgtctctcggctcctcgctgcttgcgcaa
tcacaacgtgaacagcggctccaagaagccaagacagcgcgcgcgtcgatgcttggcgga
gaagccaccgacacgcatcgggcacgtttcacccaagctgcgaaagaagcgcaagtggct
ctctcggcggctcaggcagcacattcagaagcagacaagaagcttgagctcagtaaggct
cttctggacggagcgctcagggctattgatgcatccgtgcaagacttcgcgacggcacag
gaggtcttcgccaacgccatttccgtcgccgctatgaatcgggacgaaatctatgcctta
ctcgccatcccacaggaggaacgcgagcttttgcgcagccagatcaatgccctccaaacc
aaactcaccgaagcaacgattgcgcttacccatcgccgccaggaagtggagcgcctccaa
ggcgaacgggaagaagagacggaccttgttgcactcacagaagctgtgacaacgctcaac
gctgaaatcgaagacatccgcaaccgcgtcgcagccatacaggctgagcttaagcaagat
aaccaagcgcgcgccagtgcagcagatattggtcgccagctggaagctgcacgcgaggaa
ttggagatctggcggcgcgtcgatgatgcaatcggatccgccgacggcaacaaattccgt
cgcttcgcgcagggggtgacgctcgatcagctcgtgcagctggccaatgtacagatcagt
gagctcaacccgcggtatcagctggcgcgcgccaccacatcggatctcgcgctccatgtg
attgatcgcgatatgggtgatgaagttcgctcgctgcgttcgctgtcaggcggtgagcgc
tttcttgtttcgcttggcctcgcgctcgctctgtcagggcttgaaggacggcaatcgttc
gtcgatacgcttttcatcgatgaaggctttggagcgctcgatgcagaaacgctcgacatg
gccatcgatgctttggaaacgttgcaaggtcatggccggaaggtcggtgtgatcacgcac
gtcgccgcgatggttgaccgtatcgctgtgcaaatccgcgtcgagaaacgtggcggtggg
cgaggtgtcgtgcgcgtcgtcgacgcgggtttcaacgacgccagcgcctttgcggttttc
gccgaagcctga
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