Candidatus Filomicrobium marinum Y: BN1229_v1_1539
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Entry
BN1229_v1_1539 CDS
T03857
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
fiy
Candidatus Filomicrobium marinum Y
Pathway
fiy03030
DNA replication
fiy03410
Base excision repair
fiy03420
Nucleotide excision repair
fiy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fiy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN1229_v1_1539 (polA)
03410 Base excision repair
BN1229_v1_1539 (polA)
03420 Nucleotide excision repair
BN1229_v1_1539 (polA)
03440 Homologous recombination
BN1229_v1_1539 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fiy03032
]
BN1229_v1_1539 (polA)
03400 DNA repair and recombination proteins [BR:
fiy03400
]
BN1229_v1_1539 (polA)
Enzymes [BR:
fiy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BN1229_v1_1539 (polA)
DNA replication proteins [BR:
fiy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN1229_v1_1539 (polA)
DNA repair and recombination proteins [BR:
fiy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
BN1229_v1_1539 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN1229_v1_1539 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
WHD_BrxR
HHH_2
HHH_5
F28H7_8_C
Motif
Other DBs
NCBI-ProteinID:
CPR18060
UniProt:
A0A0D6JE01
LinkDB
All DBs
Position
1:complement(1467877..1470873)
Genome browser
AA seq
998 aa
AA seq
DB search
MSTSKIADSITTTCTVPEGEPVPVIKGSHVYLVDGSGYIFRAFHALPPLTRPSDGLPVGA
VHGFCQMLWKLLADSKASEAPTHIAVVFDHSAKTFRNDIYADYKANRPPPPEELIPQFPL
IRTAVQAFNVACIEQEGYEADDLIATFGRQALDAGADVTIISSDKDLMQLVRPGLVMIDG
MKNKRIGPDEVREKFGVPPDKVVDVQALAGDSVDNVPGVPGIGVKTAAELINTFGDLDAL
LERAGEIKQPKRRERLTEFADQARVSRDLVRLDANVPVNVKLEALGVRDPEAGSLLGFLQ
EMEFNTLTRRIAEKLGAEPPPALKVSVGVTVAKVKTVTVVDDTSRAASSPGGAGTPGASV
AHGNLLATEPAIDRTKYETVTTTEQLSDWITRAYETGHFAFDTETTGLDAMQVDLVGLSI
ATEPGAACYVPLGHVAAGGGLDFGGESDLVQMPIREALDLLKPLLEDPSILKIGQNLKYD
CLVMQRYGIRLNSFDDTMLISYALDGGRGGHGMDELAMRHLGHSCVPFSKVIETAPGGKK
ATKTFAAVPIDKATEYAAEDAEVTLRLWHKLKPRLVAERMTSVYETLERPLVRIITDMEC
SGIKVDRTILSRLSGTFQQRIAALEAEVHELAGDTFNLGSPRQLGVLLFDKLKLPGGKKT
KNGQWETRASLLDDLANNEDLPEDARRLVLTMLEWRQLSKLRSTYTDALPNYIHPESGRI
HTSYAMASTTTGRLASSDPNLQNIPIRTKEGREIRTAFISSEGAKLISADYSQIELRVLA
HIADIAQLKQAFADGLDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLAN
QLGISREEAGQYIKTYFERFPGIRDYMDQTKKFAHENGYVTTIFGRHVHYPEINTRNPSM
RGFLERAAINAPIQGSAADIIRRAMVRMPAALENANLRSARMLLQVHDELIFEVADADVD
RTIETVRSVMEGAAEPAVRLSVPIHVDAKAADNWEAAH
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatccaaaatagcagactccatcaccacgacgtgtacggtgccggaaggcgag
ccggtgcccgtcatcaagggcagccacgtctatctggtcgatggctccggatatattttc
agagcttttcacgctttgccgccgttgacgcgtccctcggacgggttgccggtcggagcg
gtccacggtttttgtcaaatgctgtggaagctgctcgccgacagcaaggcgtcggaggct
ccgacccacatcgcggtggtgttcgaccattccgccaagacgtttcgcaacgatatttat
gccgactacaaggccaaccggccgccaccgccggaagagctgatcccgcaatttccgctt
atccgaacggcggtgcaggccttcaatgtcgcttgcatcgaacaggaaggctacgaggcg
gacgacctgatcgcgacattcggacggcaagcgctcgacgcaggtgccgacgttacgatt
atctcgtccgataaggatctgatgcagctcgtcagacccggcctggtcatgattgatggc
atgaaaaacaagcgcatcggtccggacgaggtgcgcgaaaaattcggcgttccgcccgac
aaagtcgtcgacgtgcaagcgcttgcaggggattccgtcgacaacgttccgggggtgccg
ggaatcggtgttaagacggcggccgaactgatcaatacgtttggcgatctcgatgccttg
ttggaacgtgcaggagagatcaaacagccaaagcggcgtgaacggctcaccgagtttgcc
gatcaggccagggtcagccgcgatctcgttcggctcgacgctaatgttcccgtcaacgtc
aagctggaagcccttggtgttcgcgatcctgaggcgggatccctgctcggcttcctccag
gagatggaatttaacacgctgacgcggcgcatcgcagagaagctcggtgcggagccaccg
cccgctttgaaggtttccgtgggcgtgacggtcgcgaaagtgaagaccgttactgtggtc
gacgacacatcgcgtgctgcgtcgtctccaggtggggcgggcacacctggcgcctcggtt
gcgcatggaaatctgctcgcgacagagcccgcgatcgacaggactaaatatgagacggtg
acgacgacggaacagttgtccgactggatcacacgcgcctatgaaaccggccatttcgcc
ttcgatacggagaccacggggctcgacgccatgcaggtggatctcgttggcctttcgatc
gccaccgaaccaggtgcggcctgttacgtgccgctgggtcacgtcgcggcgggcggtggg
ctcgattttggtggtgagagcgacctcgtgcaaatgcccatacgcgaggcgctcgacctg
ctcaaacccctgctcgaagaccccagcattctgaagatcgggcagaacctaaagtacgac
tgcctcgtcatgcagcgttacggcattcggttgaacagcttcgacgatacgatgctgatc
tcctatgccctcgacggcggccgcggcggccacggcatggacgaactggccatgcgccat
ctcggccatagctgcgtgccattctcaaaagtaattgagacggcgccaggcggaaaaaag
gcgacgaaaacgtttgcagcggtgccgatcgacaaagcgacagagtacgccgcggaagac
gctgaggtgacgctgcggctgtggcataagctgaagccacgtctcgtcgccgaacgcatg
accagtgtttacgaaacgctggagagacctctcgtgcgcatcatcaccgacatggaatgt
tctgggatcaaggtcgaccgaacgatcctctcgcgtttgtccggcacgttccagcagcgg
atcgcggctctagaggctgaggtccacgaattggcgggggatacgttcaatctcgggtcc
ccgcggcagctcggcgttctgctgttcgacaaactgaagttgccaggcgggaagaaaacg
aaaaacggacagtgggaaacgcgcgcaagcctgctggatgatctcgcgaacaacgaggac
cttcctgaagatgctcgtcgtctagtcctgacaatgctggagtggcggcagctctcaaag
ctacgatcgacttatacggacgccttgccgaattacattcatcccgaaagcggtcgcatt
catacgtcgtatgccatggcgtcgacgacgactgggcgcctggcttcgtcggatcccaac
ctccagaacattccgattcggacgaaagaaggacgtgaaatccgtactgccttcatttca
tcggagggggctaagctcatttcggcagactattcgcagatcgagttgcgggttctcgcg
catattgcggatatcgctcagttgaagcaggcgttcgcagacggcctcgacattcacgcg
atgactgcgtccgagatgttcggggtgcctgtggaaggcatgcccggcgaagtgcggcgg
cgcgccaaagcgatcaacttcgggatcatctatgggatttcggcgttcgggctcgccaat
cagctcggaatttcacgcgaagaagccggtcaatacattaaaacctacttcgagcgcttc
cccggcattcgcgactacatggatcagaccaagaagttcgcccacgagaatggctacgtg
accacgatctttggccgtcatgtccattatcccgagatcaatacgcgtaatccgtccatg
cgtggcttcttggaacgtgcggcgatcaacgcgccgatacagggctcggccgccgatatc
atccggcgcgccatggtgcgcatgcccgcggcactcgaaaacgcgaacctgcgttccgca
cgcatgctcctgcaggtccacgacgaattgatcttcgaggttgccgatgcggacgtcgat
cgcacaatcgaaaccgtgcgctctgtgatggagggtgcagcggaaccggcggtcaggctt
agcgtgccaatccatgtcgacgcgaaggctgcagacaactgggaagcggcgcattga
DBGET
integrated database retrieval system
