Candidatus Filomicrobium marinum Y: BN1229_v1_1636
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Entry
BN1229_v1_1636 CDS
T03857
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
fiy
Candidatus Filomicrobium marinum Y
Brite
KEGG Orthology (KO) [BR:
fiy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fiy03016
]
BN1229_v1_1636
Enzymes [BR:
fiy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BN1229_v1_1636
Transfer RNA biogenesis [BR:
fiy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BN1229_v1_1636
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
FG-GAP_2
Motif
Other DBs
NCBI-ProteinID:
CPR18276
UniProt:
A0A0D6JDY4
LinkDB
All DBs
Position
1:complement(1555797..1556417)
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AA seq
206 aa
AA seq
DB search
MADSKIKLHKGDLPAGVTFGSSVAIDTETLGLNPHRDRLCVVQLSAGDGTAHLVQFDGKD
YSAPHLKALLADQDVLKIFHFARFDVAVLAKYLGVVVTPIYCTKIASKLVRTYTDRHGLK
DITSELLGVELSKQQQSSDWGAPTLTQQQMAYAASDVLHLHALKSRLDEMLAREGRTHFA
SAAFGFLPIRAQLDLAGYGEMDIFSH
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atggctgacagcaaaatcaaactgcataaaggcgatctgcctgcgggtgtgactttcggc
tcaagcgttgcgatcgataccgaaactctcggtctcaaccctcatcgcgaccgcctctgc
gtggtacagctctcggcgggcgacggcaccgcgcatcttgtccagtttgacggcaaggat
tattcggcaccacacctcaaggcgctgctcgcggaccaggacgtcctcaaaatctttcat
ttcgcgcgcttcgatgtcgccgtgcttgccaaatatctcggcgtggtggtgacgcccatc
tactgcaccaaaatcgcatccaagctcgtgcggacatatacggatcgccatgggctcaag
gacatcacctcagaacttctcggcgttgaattgtctaaacagcagcagagttcagattgg
ggagctccaaccctcacgcagcaacagatggcctatgcggcctccgacgtgctgcacctg
catgcgttaaagtcgcgacttgacgagatgctcgcacgggaagggcgcacgcacttcgcg
tcggccgccttcggcttccttcctatccgggcgcagctcgacctcgctggttatggggag
atggacatcttctcacattga
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