KEGG   Candidatus Filomicrobium marinum Y: BN1229_v1_3122
Entry
BN1229_v1_3122    CDS       T03857                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
fiy  Candidatus Filomicrobium marinum Y
Pathway
fiy02024  Quorum sensing
fiy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fiy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BN1229_v1_3122 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BN1229_v1_3122 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fiy03019]
    BN1229_v1_3122 (hfq)
   03036 Chromosome and associated proteins [BR:fiy03036]
    BN1229_v1_3122 (hfq)
Messenger RNA biogenesis [BR:fiy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BN1229_v1_3122 (hfq)
Chromosome and associated proteins [BR:fiy03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BN1229_v1_3122 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1
Other DBs
NCBI-ProteinID: CPR21604
UniProt: A0A0D6JI68
LinkDB
Position
1:3051225..3051479
AA seq 84 aa
MPAERVQSLQDTFLNYVRKNKTPLTIFLINGVKLQGIVTWFDNFCVLLRRDGHSQLVYKH
AISTIMPGQPVHLMDVESTETTTG
NT seq 255 nt   +upstreamnt  +downstreamnt
atgccggcagagcgagtccaaagccttcaggacacattcctgaattacgtacgtaagaac
aaaactccattgacaattttccttatcaacggcgtaaagctacaaggcatcgtcacttgg
ttcgacaatttttgcgtgttgttgcgccgcgatggtcattcccagcttgtctacaaacac
gctatttcaaccatcatgccgggccagccagtacatttgatggatgtagaatccactgag
acaacgaccgggtag

DBGET integrated database retrieval system