Candidatus Filomicrobium marinum Y: BN1229_v1_3248
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Entry
BN1229_v1_3248 CDS
T03857
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fiy
Candidatus Filomicrobium marinum Y
Pathway
fiy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fiy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN1229_v1_3248 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fiy03400
]
BN1229_v1_3248 (mfd)
Enzymes [BR:
fiy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN1229_v1_3248 (mfd)
DNA repair and recombination proteins [BR:
fiy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BN1229_v1_3248 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
Cas3-like_C_2
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CPR21815
UniProt:
A0A0D6JJI8
LinkDB
All DBs
Position
1:complement(3175225..3178719)
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AA seq
1164 aa
AA seq
DB search
MSGATPKNHDLLLTGVPEGLDALVLAKLAQEAQGAEGHAGILIHVARDDRRVDQLEGALR
FFAPQIRTISFPAWDTVPYDRVGPNSDIVARRIAALAKLTIGRRKAPTLVLTTVNAILQR
VPPVAFVRSSLKQMAAGQRIDMGRLITRLQLAGFTRTGTVMEPGEYAVRGGILDLFPPGR
TNPVRLDFFGDTLESIKSFDAETQRTLKPLQKIVLMPISELALGDAATSRFRSRYVELFG
GGTGSDPLYEAVSAGSRYPGQEHWLPLFHEQLDTLADYAPDSAISFDHRADEAVRQRFEQ
IAEHYEARTQALEVEAFGAPPYKPVPPDLMFLDGKAWGELMGQRQVYRLNPFETGEGADV
RSWNGRPGRTFAAERLAGDVNVFDAVVSHISALKREHRRVMIAAWTPGARERLAGLLNDH
GLKETRNVESFDAALELPADVTPMAVLGLEQGFVTPELAVIGEQDILGDRLVRPRRKARR
AVDVLTEATSLSVGDLVVHADHGIGRFAGLTTISALGAMHDCLELIYAGGDKLFVPVENL
ELLTRYGAEDGSAQLDRLGGVAWQSRKARLKKRLQEIAGELIKIAALRQLREAPALAPPA
GAFEEFVSRFPYEETEDQAASIDAVIEDLGAGRPMDRLVCGDVGFGKTEVALRAAFVTAM
SGLQVAVVVPTTLLARQHFKTFSDRFKGLPLNVAQASRLVGAKELAEVKEGLSNGQIDIV
VGTHALLSKSIKFARLGLLVIDEEQHFGVAHKERLKQLREDVHVLTLSATPIPRTLQLAL
TGVRELSLITTPPVDRLAVRTYISPFDPVIVRDALRRERYRGGQAFYVVPRLSDLPDVRE
FLTEAVPELRVATAHGQMTPTELEDVMTAFYEGRYDILLSTPIVESGLDVPNANTLIVHR
ADMFGLAQLYQLRGRVGRSKARAYAYITTPPGKALTEGAEKRLKVLNSLDSLGAGFSLAS
HDLDIRGAGNLLGEEQSGHIREVGFELYQSMLEEAVAAMKGGEGGELKDQWSPEISLGTS
ILIPESYVTDLQLRLGLYRRLASLETRADIDNFAAELVDRFGPAPEEVTHLLDVMEIKGL
CRQASVSRVDAGPKGAVLSFHQNSFPNPEGLVELMQRSRGLIKLLPDHKLVFKAEWDLPE
QRLKGVRGLVKQLAEIAERERKVA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcgctacccctaaaaaccacgatctgctgctgacaggtgtcccggaggggctg
gatgcacttgtgctggccaagctcgctcaggaagcgcaaggcgctgaggggcatgcgggt
attctgatccacgtcgcgcgcgacgatcgccgggtcgaccagctcgagggtgcgctgcgc
ttcttcgcgccgcaaattcgcacgatctcttttccagcgtgggatacggtcccctatgac
cgggttgggcctaattccgatatcgtggcgcgtcgcatcgcggcactggccaagctgacg
atcgggcgtcggaaagcgcctaccctggtgctaaccaccgtcaacgcgatcctgcaacgg
gtgcctccggtcgccttcgtccgcagctccttaaagcagatggcagctgggcagcggatc
gatatggggcgattgatcacgcgattacagctcgcgggatttacgcgcactgggacggtg
atggagccgggcgaatatgcggttcggggtggcattctcgacctttttccgccgggcaga
accaatccggttcggctcgatttctttggcgatacgctggagagcataaaatccttcgac
gcggaaacgcagcgcacactcaagcctttgcagaagattgtgctcatgccgatttccgaa
ctggcgctgggggatgcagcgaccagccgttttcgtagtcgttacgtcgaactgttcggc
ggagggacaggcagcgatccgctctacgaggccgtgagtgcgggcagccgctatccgggg
caggagcactggcttccgctctttcatgagcaactcgatacactggcggactacgcgccg
gattctgccatttcattcgaccaccgcgccgatgaggctgtgcggcagcgtttcgagcag
attgcggaacattacgaagcgcgcacgcaggcgcttgaggtggaagccttcggcgcgcct
ccatacaagcctgtgccgccagacctcatgttccttgatgggaaagcgtggggtgaactt
atggggcagcgccaagtctatcgtttgaacccgtttgagacgggcgaaggcgcggacgta
cgctcatggaatggccgcccgggacgaacgttcgcggccgagcgcctagcaggagacgtc
aatgttttcgacgctgtcgtcagtcatatctcggcgctaaagcgtgaacatcggcgcgtg
atgattgcggcgtggacgcccggtgctcgggagcggcttgccggattgctcaacgatcac
ggtctaaaggagacccgcaacgttgagagttttgatgcggctctggagcttccggcggac
gtcacgcccatggctgtgctcggtttggagcagggttttgtcactcccgaactcgcggtt
atcggtgagcaggacattcttggcgacaggctggtgcgaccgcggcggaaagcccgtcgc
gctgtggacgttcttacggaagcgacgagcctttccgttggcgatctcgttgtgcatgcc
gatcatggtattggccgctttgcagggcttacgacgatttccgcactcggcgcgatgcac
gattgccttgagctgatctatgcgggtggcgacaaactgttcgtgccggttgagaacctc
gaactgttgacgcgctatggtgcggaggacggttcggctcagcttgacaggttgggtggt
gtcgcatggcaatcgcggaaggctcggctcaagaagcgcctccaggaaattgctggcgaa
ctcatcaaaatcgcagcgctacggcaattgcgcgaggcgccggcgttggcccctccggct
ggggcctttgaagagtttgtctcgcgttttccgtatgaggaaaccgaggatcaggccgcc
agtatcgatgcggtgatcgaggatcttggggcgggccgtccaatggatcgccttgtttgt
ggcgacgttggatttggcaagacggaagtcgcgttgcgtgcagcctttgtgactgcgatg
agcggccttcaggtcgcagttgtcgtcccaacgacgcttcttgcccgtcagcacttcaag
acatttagcgaccggttcaaaggattgccgctcaatgtggcgcaggcttcccggcttgtg
ggtgctaaagagctggctgaagtgaaggaggggttgtcaaacgggcaaatcgatatcgtt
gtgggaacccacgcgctcctcagcaagtcgatcaagtttgcccggctcgggctgctggtg
atcgacgaggaacaacacttcggtgtcgcgcacaaggaacgcctcaagcagctacgtgaa
gatgttcatgttctcacgctatcggcgacgcctattccgcggacacttcagcttgcgttg
acgggtgtacgcgagctgtctttgattacgacaccgccggtcgatcgtttggctgtgcgc
acgtatatctcgccgttcgatcccgtcattgtgcgcgatgcacttcgccgcgaacggtat
cgtggcggtcaggcattttatgtcgtcccgcgattgagcgaccttcctgatgtcagagaa
tttttgacagaagcggtgcccgaacttcgcgtggcgacggcacacgggcagatgacgcca
actgagttggaagacgtcatgactgcgttctacgaggggcgttacgacattctcttgtcg
acgccaatcgtcgagtccggtctcgatgtgcccaatgccaacacgctgatcgtccatcgt
gccgatatgtttggcttggcgcagctttatcagctgcgcgggcgcgtgggccgctcgaag
gcgcgtgcgtatgcctacattacgacgccaccgggcaaagctctgacggaaggcgccgag
aagcggctcaaggtcttaaattcattggactcattaggggcaggtttttcgttagcgtcg
cacgatctggatattcgtggtgcgggtaacctgcttggcgaagagcaatccgggcacatc
cgcgaagttggcttcgagctttatcagtcgatgctggaagaagccgtggctgcaatgaag
ggcggcgaaggcggtgagttgaaggatcagtggagtccggaaatttcgcttggtacgtcg
atcctcatccccgagagttacgtcacagatctacagctgaggctgggactttatcgcagg
ttggccagccttgagacacgtgcggatatcgacaattttgcagcggaattggtcgatcgc
tttggtcccgcgccggaagaggttacccatcttctggatgtcatggagatcaaaggtttg
tgccgtcaagcttccgttagccgggttgatgctggtcccaagggcgcggtgttgtcgttc
catcagaacagcttccccaatccggaaggcttggtcgaactgatgcagcgatcccgcggg
cttatcaaattgttgcccgatcataagctggtgttcaaagcggaatgggatctacccgaa
cagcgcctgaagggtgttcgggggctggtaaagcagttggcggaaattgcggaacgcgag
cgtaaggtcgcgtaa
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