Flavobacterium anhuiense: BB050_00234
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Entry
BB050_00234 CDS
T04718
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fjg
Flavobacterium anhuiense
Pathway
fjg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fjg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BB050_00234 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fjg03019
]
BB050_00234 (cshA)
03009 Ribosome biogenesis [BR:
fjg03009
]
BB050_00234 (cshA)
Enzymes [BR:
fjg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BB050_00234 (cshA)
Messenger RNA biogenesis [BR:
fjg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BB050_00234 (cshA)
Ribosome biogenesis [BR:
fjg03009
]
Prokaryotic type
rRNA helicases
BB050_00234 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AOC93390
UniProt:
A0AAC9GGE2
LinkDB
All DBs
Position
263633..265537
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AA seq
634 aa
AA seq
DB search
MNKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFP
LIQKIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAREIK
RGAQIIVATPGRMQDMINRGLVNIKNIDYCVLDEADEMLNMGFYDDIVSILSDTPDEKST
WLFSATMPQEVARIAKQFMSDPLEITVGTKNSGSSTVSHEFYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAIAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISTIERI
IKQKFVEKTIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINNVLEDLSKEELIKKM
VSVEFNRFITYYKKNRDISVQSSGERRERGDSEPREFSNNGAVRYFVNIGSRDNFDWMSL
KDYLKETLDLGRDDIFKVDVKEGFSFFNTDPQHTDKVMDVLNNVQLEGRRINVEISKNDG
GGRRDHNNRGGRRDSGRREGNFAPRREGGFRSDRSSSRDGGSRDGGFRSDRSSSSRREGG
FRSSAPRSEGGSDRAPRRSENFGDSSRPRRSRRD
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaatgaatcgttactgaaggcgattttagatcta
ggatttgaaaatccgtcagaggtacaggaaaaggcgattcccctattattggaaaaagac
acggatatggttgcgttggctcaaacagggacagggaaaacggcagctttcggttttccg
ctaattcaaaaaattgatgccgacaacagaaatacacaagcattagttttatcgccaaca
cgcgagttatgtttacagattactaacgaacttaaaaactactcaaaatacgaaaaaggt
attaatgtggtagcagtttacggaggagctagtataacagaacaagcaagagaaataaag
agaggtgcacaaatcattgtggcaactccaggaagaatgcaagacatgattaacagaggt
ctagtaaacattaaaaacatagattactgtgttttggatgaggctgacgaaatgttaaac
atgggattctatgatgatatcgtatctattttatcagatactccagacgaaaaaagcaca
tggttgttctctgcaactatgcctcaagaggtggctagaatcgcaaaacaattcatgagc
gatccattagaaattactgtaggtacaaaaaattcaggttcatcaacagtatctcacgaa
ttttatttagtaaatgctcgtgaccgttatgaagctttaaaacgtttagctgatgctaat
ccagacattttctctgtagttttctgtcgtacaaaaagagacactcaagctatcgcagag
aagttaattgaagatggttatagcgccgctgcgttacacggagatttatctcaagcgcaa
cgtgatggtgtaatgaaatcgttccgtggaagacaaattcagatgcttgttgctactgac
gttgctgcacgtggtattgacgttgataacgtaactcacgttgttaactaccaattgcct
gacgagattgaaacttacaaccaccgttctggacgtacgggtagagctggaaaattaggt
acttctattgtaattgttacaaaaagcgagttacgtaaaatttcaactattgagagaatc
atcaaacaaaagtttgttgaaaaaactattccatctggaattgaaatctgcgaaattcag
ttattgcacttagctaacaaaattaaagatactgaggttgatcacgaaattgacaactat
ttaccagcaatcaacaacgttcttgaagatttatctaaagaagagttgattaagaaaatg
gtttcagtagaatttaaccgtttcatcacttactacaaaaagaatagagatatttctgtt
caatcttctggtgagagacgtgaaagaggtgattctgaaccaagagaattcagtaataat
ggagcagttcgttattttgtaaacattggttctagagacaacttcgactggatgtcatta
aaagattacttgaaagaaacattagacttaggtcgtgatgatatctttaaagtagatgta
aaagaaggtttctctttctttaacacagatccacagcatacagacaaagtaatggacgtt
ttaaacaacgttcaattagaaggccgtcgtatcaatgttgagatttctaaaaatgatggt
ggcggaagacgtgatcacaacaaccgtggcggaagacgtgattctggaagaagagaagga
aacttcgctccaagacgtgaaggcggtttcagaagcgacagaagttcttctagagatgga
ggttcacgtgatggaggtttcagaagcgacagaagctcatcttcaagaagagaaggcggt
tttagaagctctgctccaagaagtgagggtggttcagatagagctccaagacgttctgaa
aactttggagatagttcaagaccaagaagatcaagaagagattaa
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